Pediococcus pentosaceus ATCC 25745: PEPE_1728
Help
Entry
PEPE_1728 CDS
T00409
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PEPE_1728
09124 Replication and repair
03420 Nucleotide excision repair
PEPE_1728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppe03021
]
PEPE_1728
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_1728
Enzymes [BR:
ppe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PEPE_1728
Transcription machinery [BR:
ppe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PEPE_1728
DNA repair and recombination proteins [BR:
ppe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PEPE_1728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
Helicase_C
PhoH
Myco_19_kDa
Motif
Other DBs
NCBI-ProteinID:
ABJ68749
UniProt:
Q03DH3
LinkDB
All DBs
Position
complement(1703675..1706026)
Genome browser
AA seq
783 aa
AA seq
DB search
MSVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVE
MDGETFTIEGRADGVVIDDDLFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLD
FEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQYEKWIKLRNDWRTERNQAAR
KLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI
FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDR
VKDGIEDALENEDKFDKAVIQTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQ
RFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQELFEASTTDVDSKQVKRRL
TQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILD
LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATL
SPVEYYQETLGSTEGLILQMASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVE
AKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMSMEERTAFLDAFRTEKSGTLV
GFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG
MNHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAF
WKL
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaactaagataggaattcgacaactagttgaatttattttgcgtacgggtgac
ttgaacgcgacgatgaatagtcaaaatactgcattagagggtgcccgcatccatcgtaaa
ttgcaaaagcaacgtgatgaaaattacgaaaaagaatactacgttaaacgagccgttgaa
atggatggggaaacttttacaattgaaggtcgtgcggatggagtagttattgacgatgac
ttgtttatcgaagagattaaaacttcggatcctacttttgaagagttaagtgagaacact
aagacattgtattggagccaagcaaaagtttacggagcgattttgacgcaagacctagac
ttcgaaaaagtgaccattcaactgacttattatcaacgtccaaccgacgaagtgattgaa
aaaagacaaacatttacccgaacagaactgaccgaattttttgatgatttggttagacaa
tacgaaaagtggattaagctacgcaatgattggcgtactgaacgtaaccaagcagcgcgc
aaattagaatttccatttccagagtatcgaaatggacaacgagacctagcagttgcagtt
tacaaaactattttaactaaacaacgcctcttcgtagaagctccgaccggaacgggaaaa
acagtttcaacgatgtttccgaccattaaagccctgggtgaggaagttattgaacggatt
ttctatttgacggctaagcaaagtactcagcacgtcgccgaagaagctatcgaattgatg
gctaatcaaggattgagaattaaatccattacaattacagctaaagatcgaattatattt
cctgaagaagtggatatgaaaccagaagaaaatccatacatgattgggtattatgatcga
gtaaaggatgggatagaggacgccttagaaaatgaagacaagttcgacaaagctgttatt
caaacgtatgcgaagaagtatatgttagatcctttcgaattttcattagatttatcttta
ttttgtgacttaattattggagattacaactatttgtttgatcccatggtgtatctccag
cgcttttttacaatcgaagaccaaagtaatttctttttaattgatgaggctcataatttg
gtgtcgcgttctagagcaatgtattcagcggtggtagagcaggctttggtaattcaagca
caagaactttttgaagcctcaactacggatgtggactcaaaacaagttaaacgtagattg
acccaattagataatgaatttgaattgattcatcaagcatttaaaaatcaaacaaaagat
tacatggtggaatataatccactagacgggctggaaaaagccatgttgaacttcaatgaa
gtagtccgagaatggctgcctaaacagcctgataacgatttaaccagtaccattttggat
ttgttttttgccaacaataaatacattaagatcagtgaatattttgatgaaagttatcgg
attttaattcaaaatcccgaagataatataaaaatcgaagaacagattctagatcccagt
ccctatttagatgcttcattaaaaaagggacgcggggcgattttcttttctgctacgtta
tcgcccgttgaatactatcaagaaactttgggaagtacggaaggcttgatcttacagatg
gcttcaccattcgaagaaaaacagcaaaatcttttaattactagttatattgatactaga
tatgcggcgcgccaaagaaatttacctaacatcatcgcttcaatcgcaactctggtggaa
gccaagacggggaactacttaatttttggaccatcctatgcctatttaaatcaaattgcg
gatgcatttcaggaaatgcatcctgaaattgaagttcaactgcaaactagccagatgagt
atggaagagcggacagcatttttagatgcttttcggaccgaaaaatcgggaacattagtt
ggttttgcggtgttaggcggactcttttcagaaggaattgatttaattaacgagcaacta
attggtgtagggattgtaagtgtaggattaccgggcttgagtacagaaagaaatttgctg
aaagaatattttgacgaaaaaaatggccatggatttgagtacgcatatcaattacctgga
atgaaccacgttcttcaatcagcggggagattaattcgaactcgacgagatcgaggtaat
attttgttaatggatcaaagatttgtcacatctcgctatttaaatttatttcccggacat
tggaaaaactaccaaaaagtaacttctgtaagcgatttacaaaaagcagtcaaagcgttc
tggaaactgtag
DBGET
integrated database retrieval system
