Candidatus Purcelliella pentastirinorum: C9I82_439
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Entry
C9I82_439 CDS
T05580
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
ppet
Candidatus Purcelliella pentastirinorum
Pathway
ppet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I82_439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppet03019
]
C9I82_439
03009 Ribosome biogenesis [BR:
ppet03009
]
C9I82_439
Messenger RNA biogenesis [BR:
ppet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I82_439
Ribosome biogenesis [BR:
ppet03009
]
Prokaryotic type
rRNA helicases
C9I82_439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
AAA_19
Terminase_6N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXN02387
UniProt:
A0A346E082
LinkDB
All DBs
Position
complement(455796..457433)
Genome browser
AA seq
545 aa
AA seq
DB search
MNKTKLTFNDLKLNSNIIKALKDIGYIKPSPIQIACIPELIKGRDVLGIAQTGSGKTAAF
ALPFLNNININKKNIQILVLTPTRELAKQITNSYIKFAKYINNIKIISIYGGQKYETQLY
LLRNKPQIIIGTPGRLLDHLKRKTINLSKIKKIIIDEADEMLKMGFIEDVEKIISKIKKK
YQIALFSATMPNNIRNITYKFTKNPIEIKIKSNIQNIPDINQNYCLIYGRKNEALSRFLE
IEKYEAVLIFVRTKNSTLKMTSFLEKKGYTCSPLNGDMNQISRERTLEKFKQGPLNILIA
TDIAARGLDVERINLVINYDIPLDPKSYIHRIGRTGRAGRKGKSLLFVENKERYLLKNIK
KIIKLPLKKIELPKPELLNLHRQNKFIDKIQKQLKNKNLEKYRILLIKLQKEKEIDIETL
ATILLKLAQKEKPLLLPPDNIKYKKINKIYNKPKTNSMCLYTINLGIKDGIKIKQILNEL
NNKNKIKNNDIGKIKIFKSYSTIELSKRTRKKIEKNKNKIKIMNKITLIRLSRKRYIKKK
RQITN
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaacaaaattaacttttaacgatttaaaattaaactcaaatataataaaagcg
ttaaaagatattggatatattaaaccatcacctatacaaattgcatgtataccagaatta
ataaaaggaagagatgtactaggaatagcacaaacaggaagcggaaaaacagcagcattt
gcattaccatttttaaataatataaatataaataaaaaaaatatacaaatattagtatta
acaccaactagagaattagcaaaacaaataacaaactcatatataaaatttgcaaaatat
ataaataatataaaaataatatctatttatgggggacaaaaatatgaaacacaattatat
ctattacgtaataagcctcaaataattattggaacaccaggaagattattagatcatcta
aaaagaaaaactataaatttatctaaaataaaaaaaataataatagatgaagctgatgaa
atgttaaaaatgggatttatagaagatgtagaaaaaataatatcaaaaataaaaaaaaaa
taccaaatagcattattttcagcaactatgcctaataatattagaaatattacatataaa
tttacaaaaaatcctatagaaataaaaataaaatctaatatacaaaatatacctgatatt
aatcaaaattactgtcttatatacggtcgaaaaaatgaagcattatcaagatttttagaa
atagaaaaatatgaagcagtcttaatttttgttcgaacaaaaaattctacattaaaaatg
acaagttttttagaaaaaaaaggatatacatgttctccattaaatggagatatgaatcaa
atttccagagaaagaacattagaaaaatttaaacaaggaccattaaatatcttaattgct
actgatatcgcagcaagaggattagatgttgaacgtataaacttagtaataaattatgat
attccattagatcctaaatcatatatacatcgaataggaagaacaggtagggctggtaga
aaaggaaaatcattgctatttgtagaaaataaagaaagatatttactaaaaaacataaaa
aaaattataaaattaccgttaaaaaaaatagaattacctaaaccagaattattaaattta
catagacaaaataaattcattgataaaatacaaaaacaattaaaaaataaaaatttagaa
aaatatcgtattttattaataaaattacaaaaagaaaaagaaatagatatagaaacttta
gcaactatattattaaaactagcacaaaaagagaagccattattattaccaccagataat
attaaatataaaaaaataaataaaatttacaataaaccaaaaacaaattcaatgtgttta
tatacaattaatctaggaataaaagatggaataaaaattaaacaaatattaaatgaatta
aataataaaaataaaattaaaaataatgatattggaaaaataaaaatatttaaatcatat
tcaactatagaattatctaaaagaacaagaaaaaaaatagaaaaaaataaaaacaaaata
aaaattatgaataaaataactttaataagattatcaaggaaaagatatattaaaaaaaaa
agacaaataacaaattaa
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