Pseudomonas putida F1: Pput_2501
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Entry
Pput_2501 CDS
T00537
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pput_2501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_2501
Enzymes [BR:
ppf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pput_2501
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pput_2501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABQ78636
UniProt:
A5W3C6
LinkDB
All DBs
Position
2848022..2850523
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGERKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YVKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDEYITYYLFDLPFLGGQDLRQLPLQHRRDTLRQLLEHNHSDVIKYSADFD
QPVDSLLDSACQLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVVVGYTDPKGSRSS
FGALLLALHDNERGELRYAGKVGTGFNTTTLASIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARMRKQLGLE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgctacacccgagccc
agcggcgaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcttggcagtgcatgtggag
gaccatccgttggactacgccgatttcgagggccatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tatgtcaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcccccttgccagcacagctacagccacag
ctggcaacgttggtggattctccacccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtatcctggcccgaatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggtggctgccctgcgcgcgctcggtatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaacgccttcgataccgagcacgacgaatacatcacctattatctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaccgccgcgatacg
ttgcgccaactgcttgagcacaaccattcggacgtcatcaagtattccgccgacttcgac
caacctgtcgactcactgctcgacagtgcctgccagctgaagctggaaggccttatcggc
aagcgagctgacagtgtctacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaggaattcgtggtcgtcggctacaccgaccccaaaggcagccgcagcagc
ttcggtgccctgctgctggccctgcacgacaatgagcgtggcgagctgcgctatgccggc
aaggtcggtaccggcttcaacaccacgacactggccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcttgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtgctcagttatgaaaaggccgag
gcaggccaggcggcgatggtcatcaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggaactgcacacctggaacgccacggacaaggatttcgacaagccggaccgt
tttgtcctcgacctggaccctgatcctgcgctgccctggaaggcgatggtggaggcgacc
caactggccctcaccctgctggatgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccgacgtgccggctgggacgaagtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaatga
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