KEGG   Pseudomonas putida F1: Pput_2501Help
Entry
Pput_2501         CDS       T00537                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppf  Pseudomonas putida F1
Pathway
ppf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pput_2501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppf03400]
    Pput_2501
Enzymes [BR:ppf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pput_2501
DNA repair and recombination proteins [BR:ppf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pput_2501
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABQ78636
UniProt: A5W3C6
LinkDB All DBs
Position
2848022..2850523
Genome map
AA seq 833 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGERKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YVKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDEYITYYLFDLPFLGGQDLRQLPLQHRRDTLRQLLEHNHSDVIKYSADFD
QPVDSLLDSACQLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVVVGYTDPKGSRSS
FGALLLALHDNERGELRYAGKVGTGFNTTTLASIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARMRKQLGLE
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgctacacccgagccc
agcggcgaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcttggcagtgcatgtggag
gaccatccgttggactacgccgatttcgagggccatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tatgtcaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcccccttgccagcacagctacagccacag
ctggcaacgttggtggattctccacccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtatcctggcccgaatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggtggctgccctgcgcgcgctcggtatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaacgccttcgataccgagcacgacgaatacatcacctattatctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaccgccgcgatacg
ttgcgccaactgcttgagcacaaccattcggacgtcatcaagtattccgccgacttcgac
caacctgtcgactcactgctcgacagtgcctgccagctgaagctggaaggccttatcggc
aagcgagctgacagtgtctacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaggaattcgtggtcgtcggctacaccgaccccaaaggcagccgcagcagc
ttcggtgccctgctgctggccctgcacgacaatgagcgtggcgagctgcgctatgccggc
aaggtcggtaccggcttcaacaccacgacactggccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcttgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtgctcagttatgaaaaggccgag
gcaggccaggcggcgatggtcatcaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggaactgcacacctggaacgccacggacaaggatttcgacaagccggaccgt
tttgtcctcgacctggaccctgatcctgcgctgccctggaaggcgatggtggaggcgacc
caactggccctcaccctgctggatgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccgacgtgccggctgggacgaagtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaatga

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