Pseudomonas putida GB-1: PputGB1_0512
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Entry
PputGB1_0512 CDS
T00650
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PputGB1_0512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_0512
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputGB1_0512
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PputGB1_0512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
AAA_23
AAA_22
RsgA_GTPase
BCA_ABC_TP_C
Viral_helicase1
nSTAND3
DnaJ_CXXCXGXG
APS_kinase
cobW
Zn-ribbon_8
AAA_21
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABY96423
UniProt:
B0KK95
LinkDB
All DBs
Position
complement(584379..587213)
Genome browser
AA seq
944 aa
AA seq
DB search
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC
PDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN
GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
QGEEMIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNAELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVDFKYL
NDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHV
WVGEKTLPAVTNLPIGEASNYFGELTLTGRRGEIAAKILKEICERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIAVP
AKRTPRNKKLQLKLKGARGNNLQNVDLEIPVGLMTCVTGVSGSGKSTLINNTLFPLAATA
LNGASSLEAAPHGSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYK
GKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLLERDRA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagatcctgattcgtggggcacgtacccacaacctgaagaacatcgacctgacc
ctgccccgggacaagctgatcgtgatcaccggcctgtccggttccggcaagtcgtccctg
gcgttcgataccttgtacgccgaaggccaacgccgctacgtcgaatcgctgtcggcctac
gcccggcagttcctgtcgatgatggaaaagcccgacgtcgacaccatcgaaggcctgtcg
ccggcgatttccatcgagcagaagtcgacctcgcacaacccgcgctccacggtcggcacc
attaccgaaatctacgactacctgcgcctgctgtacgcccgagtcggcaccccccgctgc
ccggaccacgacatcccgctggaggcgcaaacgatcagccagatggtcgacctggtgctg
gagcgcccggaaggcagcaagttgatgctgctggcaccggtagtgcgcgaacgcaagggc
gagcatctggcggtgttcgacgaactgcgggcccagggcttcgtgcgggcccgggtcaac
ggcaagctctacgagctcgatgagctgcccaagctggacaagcagaaaaagcacagcatc
gatgtggtggtggaccgcttcaaggtccgcgccgacctgcagcagcgcctggcggagtcg
ttcgagaccgccttgaagctggcggacggcatcgctctggtggcgccgatggacgacgag
caaggcgaagaaatgatcttctccgcgcgcttcgcatgcccggtgtgcggccacgcgatc
agcgagctggagccgaagctgttttccttcaacaacccggccggtgcctgcccgacctgc
gatggcctgggggtaaaacagttcttcgacaccaagcgcctggtcaatgccgaactcacc
cttgccgaaggcgcgatccgcggctgggaccggcgtaacgtgtactacttccagatgctc
ggctcgctggccgcacattatggcttcagcctcgaagagccattcggcgaattgtcggcc
gaacaccagaaggtgattctgcagggcagtggcaagcagagtgtcgacttcaagtacctc
aacgaccgtggcgatatcgtcaagcgctcacacccgttcgaagggattgtgccaaacctg
gagcgccgctaccgcgaaaccgaatcggccaccgtgcgtgaagaactggccaagttcctc
ggcacgcaaccttgcccagattgccgaggtacacgcctgcgccgcgaggcacgccatgta
tgggtgggcgaaaagaccctgccagccgtcaccaacctgccgatcggtgaagccagcaac
tactttggcgagctgaccctgaccgggcgccgtggcgaaatcgcggcgaagatcctcaag
gagatctgcgagcgcctgcagtttctggtcaatgtcggcctcgactacctgaccctggac
cgtagcgctgacaccctgtcaggtggtgaagcacaacgtatccgcctggctagccagatc
ggcgcgggcttggtgggggtgatgtacattcttgatgaaccgtccatcggccttcatcaa
cgcgataacgaccgcttgctggccaccctcaaccacttgcgcgacctgggtaacacggtg
atcgtggtggaacacgacgaggacgccattcgcctggccgactacgtcgtcgacatcggc
ccaggtgccggtgtgcacggtgggcagatcgtcgcggagggctcgccacaggaggtcatg
gaccatcccgattcgttgacgggcaagtacctgtccgggcgcaagaagatcgccgtaccg
gccaagcgcacgccgcgcaacaagaaactgcagctcaagctcaagggcgcgcgaggcaac
aacctgcagaacgtcgacctggaaatcccggtgggcctgatgacctgcgtgaccggggtg
tccgggtcgggcaaatcgacgctgatcaacaacaccctgttccccttggccgccaccgcc
ctcaatggcgcaagcagcctggaagccgcaccgcatggcagcatggacggcctgcaacac
ctggacaaagtggtggacatcgaccagagcccgatcggccgcaccccgcgttccaacccg
gcgacctacaccggtatcttcacgccgatccgcgagctgttctcaggggtgccggaatcg
cgttcacgtggttatggcccagggcgcttctcgttcaacgtcaaaggcggccgttgcgag
gcctgtcagggcgatggcctgatcaaggtggaaatgcacttcctgccggacatctacgtg
ccgtgcgacgtgtgcaagagcaagcgctacaaccgagaaacgctggagatcaagtacaag
ggcaagaacatccacgaggtgctggaaatgaccatcgaggatgcccgcgagttcttcgat
gcggtaccggcgctggcgcgcaagctgcaaacgctgatggatgtgggcttgtcgtacatc
aagctggggcagtcggcaaccacgctgtccggtggtgaagcgcagcgggtgaagctgtca
cgcgagctgtccaagcgcgatactggcaagaccctgtacatcctcgacgagccgaccacg
ggcctgcacttcgccgacatccagcagttgttggacgtgttgcatcgcctgcgcgaccac
ggcaataccgtggtggtgatcgagcataacctggatgtgatcaagaccgccgactggctg
gtggacctgggacccgagggtggctccaagggtgggcagatcattgcctgcggcacgccg
gaagagctgagcgagatgaaacagtcgtacaccggccattacctgaaaccgctgctggag
cgggaccgagcctga
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