Pseudomonas putida GB-1: PputGB1_4954
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Entry
PputGB1_4954 CDS
T00650
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ppg
Pseudomonas putida GB-1
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_4954
03009 Ribosome biogenesis [BR:
ppg03009
]
PputGB1_4954
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PputGB1_4954
Ribosome biogenesis [BR:
ppg03009
]
Eukaryotic type
Pre-60S particles
RNases
PputGB1_4954
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ABZ00839
UniProt:
B0KL03
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All DBs
Position
complement(5527134..5527676)
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AA seq
180 aa
AA seq
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MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDDVLARMDEW
NTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMR
NLENYFHYRNLDVSTLKELAARWAPNVRDSFKKGNTHLALDDIRESIAELRHYREHFIKL
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccacagaacctgatctggatcgacctggaaatgaccggcctggatccagac
agcgacgtcatcatcgaaatggcaaccatcgtcaccgacagcgagctgaacaccctggcc
gaagggccggtgatcgccatccaccacagtgacgacgtgctggcgcgtatggatgagtgg
aacacccgcacccatggcgcttcgggcctgacccagcgcgtgcgcgagagcaaggtcagc
atggctgaagccgaggcgcagaccatcgccttccttgaacagtgggtacccaaaggcaag
tcgccgatctgcggcaacagcatctgccaggaccgccgtttcctctaccgtcacatgcgc
aacctggaaaactacttccactatcgcaacctggatgtttccactctgaaggagctggcc
gcgcgctgggcgccgaatgtgcgtgacagcttcaagaagggcaatacccacctggcgctg
gacgatattcgcgagtcgatcgccgaactgcgtcactaccgcgagcacttcatcaagctg
tga
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