Pseudoalteromonas phenolica: PP2015_2961
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Entry
PP2015_2961 CDS
T04165
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PP2015_2961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphe03400
]
PP2015_2961
Enzymes [BR:
pphe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PP2015_2961
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PP2015_2961
DNA repair and recombination proteins [BR:
pphe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PP2015_2961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_Tnp_IS1595
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ALO43444
UniProt:
A0A0S2K5X1
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All DBs
Position
I:complement(3372368..3373177)
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRLGISPHIEKQTVSKVLVHNASLRWPVPDEVKDIEGLTINSVRRRAKYLM
LDTDIGSVILHLGMSGHLRIVPISEPLKKHDHIEIHFDNGKALRLNDARRFGACLWQAPN
ESHTLFAKLGPEPLTDEFTADHLFECSRNKKVPIKQFIMDNHVVVGVGNIYANESLFKAG
IHPKREAGKVSLKRYKLLTPIIKDTLAAAITQGGTTLKDFAQSDGKPGYFAQQLLVYGRK
GEECVTCKTVLKEIRLGQRSTVYCPKCQN
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagtcgaagtcagccgtttaggcattagcccacacattgaaaaa
caaacagtcagcaaagtattagtacacaatgccagccttcgttggcctgtgccagatgaa
gtgaaagacattgaagggctgacgatcaacagtgtgcgccgtcgagcaaaatacttaatg
ctcgatacagatattggcagtgtgattttacacttgggtatgtcggggcatttgcgcatt
gtgccaattagtgagccgttaaaaaaacacgatcatattgagatccacttcgataatggt
aaagcgttacgtctaaacgatgctcgtcgttttggtgcgtgtttatggcaagcacctaat
gagtctcatacgttgttcgcaaagcttgggcctgagccactcaccgatgaattcactgcc
gatcatttatttgaatgttcgcgcaacaagaaggtgcctataaagcaatttattatggat
aaccatgtggttgtgggcgtcggtaatatttacgccaacgaatcgttgttcaaagcgggt
attcatccaaaacgcgaagcaggcaaggtgtcgttaaagcgctataaattactcacgcca
atcatcaaagatactttagccgcggccattacccaaggtggtactacgctaaaagacttc
gcacagtctgacggtaaacctggttattttgctcagcaattactggtttatgggcgtaaa
ggcgaagagtgcgtgacgtgtaaaaccgtactgaaagaaattcgcttaggccagcgaagt
accgtgtattgcccaaagtgtcagaattaa
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