KEGG   Pannonibacter phragmitetus: APZ00_00300Help
Entry
APZ00_00300       CDS       T04214                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pphr  Pannonibacter phragmitetus
Pathway
pphr03030  DNA replication
pphr03410  Base excision repair
pphr03420  Nucleotide excision repair
pphr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pphr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    APZ00_00300
   03410 Base excision repair
    APZ00_00300
   03420 Nucleotide excision repair
    APZ00_00300
   03430 Mismatch repair
    APZ00_00300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pphr03032]
    APZ00_00300
   03400 DNA repair and recombination proteins [BR:pphr03400]
    APZ00_00300
Enzymes [BR:pphr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     APZ00_00300
    6.5.1.6  DNA ligase (ATP or NAD+)
     APZ00_00300
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     APZ00_00300
DNA replication proteins [BR:pphr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    APZ00_00300
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     APZ00_00300
DNA repair and recombination proteins [BR:pphr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     APZ00_00300
   NER (nucleotide excision repair)
    Other NER factors
     APZ00_00300
   MMR (mismatch exicision repair)
    Other MMR factors
     APZ00_00300
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: ALV25706
UniProt: A0A0U2VZC9
LinkDB All DBs
Position
complement(62641..64287)
Genome map
AA seq 548 aa AA seqDB search
MRAFSRLLDRLAFESSRNAKEALLVDYFRRTPDPDRGYALAALTGTLEFRHAKPAMLRAL
AGERTDPVLFALSYDFVGDLSETVALMWPAPGRAGEAGGEGPGLSAVVQRLAGAGRSEVP
QLIAGWLDLLDETSRWALLKLVTGGLRVGVSARLAKTALARLGTVSVDEIEEVWNAQKPP
YTALLAWVEGQGSKPEASDPAPFRPPMLAHPLDEARDVEALDPAQFLAEWKWDGIRVQAS
AGRDAAGRRVARLYSRSGDDISAAFPDVLESLTFEGCIDGELLILRDGAVQPFSELQKRL
NRKTAAPKLMQQLPAAIRAYDLLMDNGEDLRALPFEQRRARLEAFLIAQAPPRIDLSPLV
PFANWEELARWREEPSAHLPEADAGAVEGLMLKRRQSPYLAGRPRGEWFKWKRDPFTVDA
VLMYAQRGHGKRSSYYSDYTFGVWRDEELVPVGKAYSGFTDEELLEIDRFVRNNTVNRFG
PVREVAHTPDLGLVLEVAFEGLNRSGRHKSGLAMRFPRIARLRWDKPPHEADRIEILEAL
LPAAASVA
NT seq 1647 nt NT seq  +upstreamnt  +downstreamnt
atgcgtgccttttcccgccttctggaccgtcttgcctttgaaagctcccgcaatgccaag
gaggcgctgctggtggattatttccgccgcacgcccgatccggaccggggctatgccctt
gcggcgctgacgggcacgctggagttccgtcacgccaagcctgcaatgctgcgggcgctg
gcgggggaacggacggacccggtgctcttcgcgctgtcctatgatttcgtcggcgatctg
tccgagacggtggcgctgatgtggcccgcgcccggccgggccggcgaagccggtggcgag
gggccgggactttccgccgtggtgcaacggcttgctggcgctggccgcagcgaggtgccg
cagctgattgccggatggctggaccttctggatgagacgagccgctgggcgcttttgaag
cttgtcaccggcggcttgcgggtgggtgtatccgcccgcctcgccaagacagcgctggcg
cggcttggaactgtcagcgtggacgagatcgaggaggtctggaacgcgcagaagccgccc
tatacggcgctgctggcctgggtggaggggcagggcagcaagccggaagcctcggacccg
gcgcccttccgcccgccgatgctggcgcacccgctggatgaggcgcgggacgtggaggcg
ctggatccggctcagtttctggccgaatggaaatgggacggtatccgcgtgcaggcttca
gccgggcgagatgcggcgggcaggcgtgtggcgcggctttactcccgctccggcgatgac
atttccgccgcctttcccgatgtactggagagcctgaccttcgagggctgtatcgacggg
gaactgctgatcctgcgcgatggtgcggtgcagcccttttccgagctgcagaagcggctg
aaccgcaagacggcagcaccgaagctgatgcagcagcttccggccgccatccgggcctat
gatcttctgatggacaatggagaagacctgcgcgccctgccgtttgagcaaaggcgggcg
cgactcgaggctttcctgatcgcacaagccccgccgcgcattgacctgtcgccgctggtg
ccctttgcgaactgggaggaactggcccgctggcgggaggagccttccgcgcatctgccg
gaggctgatgcaggcgccgtggaagggttgatgttgaagcggcggcagtcgccctatctg
gcagggcgtccacgcggggaatggttcaagtggaagcgcgatcccttcacggtggacgcg
gtgctgatgtatgcgcagcgcggccacggcaagcgctcgtcctattattcggactatacc
ttcggcgtctggcgggacgaggagcttgtgccggtgggcaaggcctattccggctttacc
gatgaggaactgctggagatcgataggttcgtccgcaacaacaccgtcaaccgcttcggt
ccggtgcgggaagtggcgcatacgcccgatctggggctggtgctggaagtggcgttcgag
gggctgaaccgttccggccggcacaaatccggccttgccatgcgctttccccgcatcgcc
cgcctgcgctgggacaagccgccgcatgaggccgaccggatcgagatcctcgaggccctg
ttgccagcagctgccagcgtggcttga

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