KEGG   Pseudomonas plecoglossicida: RK21_01966Help
Entry
RK21_01966        CDS       T03646                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppj  Pseudomonas plecoglossicida
Pathway
ppj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RK21_01966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppj03400]
    RK21_01966
Enzymes [BR:ppj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RK21_01966
DNA repair and recombination proteins [BR:ppj03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RK21_01966
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJG13474
UniProt: A0A099N1D9
LinkDB All DBs
Position
complement(2111777..2114269)
Genome map
AA seq 830 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDSQARSEADYSIVDAQPDSVL
SDRTLVPRKPTAKKAAAPRRKAASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGY
RILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGENGAADFQAL
QNAFDTEHDEHITYYLFDLPFLGSQDLRQLPLQDRRDTLQRLLEHNESDVLKYSADFDQP
VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG
ALLLALHDNDSGELRYAGKVGTGFSTTTLASIHARLKPLETAKPALPKPPTGAEARGVHW
LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEAL
GELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLKNRPVALVRAPDGLAGELFFQK
NAGQLHLPNVLSYDKAEAGQAAMVINRADTLIGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFS
HGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIW
REELPQLKGANQWNIGNVLERLGDVDDPWADYGKTRQSITVGMRKQLGLA
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggcccacgcgctgcagttctgcatccagaagcac
gatgccagccacctgcactacgacttccgcctggaactcgatggcacgctgaaaagctgg
gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag
gaccacccgctggactacgccgacttcgaaggccatatccccgaagggcattacggcgcg
ggcgacgtgatcgtctgggaccggggcatctgggagcccgaaggtgatgcgcatgaggcc
tatgccaagggcaaactgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac
ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcgcacgac
agccaggcgcgcagcgaagccgactacagcatcgtcgacgcccagcccgacagcgtgctc
agcgaccgcacgctggtgccgcgcaagccgacagcaaaaaaggccgccgcgccacgtcgc
aaagccgccagcaaaggccggaaggtgccgttgccggcgcagctgcagccacaactggcg
accttggtcgactccccgcccagtggcgactggcgctacgaggtcaagttcgacggttac
cgcatccttgcccgcatcgacggtgatgacgtgcgcctgttcacccgcaatggccatgac
tggagcggcaagatgcccaggcaggttgccgctttgcgcgcgctgggcctcgattcggcc
tggctcgatggcgaggtggtggtggctggcgaaaacggcgcggcggacttccaggcgttg
cagaacgctttcgacaccgagcatgacgagcacatcacctattacctgttcgacctgccc
ttcctgggcagccaggacctgcgccagttaccgctgcaggaccggcgcgacaccttgcag
cgcttgctggaacacaacgaatcggacgtactcaagtactccgccgactttgaccagccg
gtcgaatccctgctcgacagcgcctgccggctgcaactcgaaggcctgatcggcaagcgc
gtcgacagcccctacagcggccgccgcagccccgactggatcaagctcaagtgcaagcag
cgccaggagttcgtaatcgtcggctacaccgaccccaaaggcagccgcagcggctttggt
gccctgctgctggccttgcacgacaacgacagcggcgagttgcgctatgccggcaaggtc
ggcaccggcttcagtacaaccacgctggccagcatccatgcccggctcaaaccattggaa
accgccaagccggccctgcccaaaccgcccaccggggccgaagcccggggcgtgcattgg
ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg
cgccactcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag
cgcagcatgcccgccaagaccctgcccaagcgcaagcaagccaaggcccccgaggctttg
ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag
cgcgaggtcgccgagtactacgccgcagtcagccaatggatattgccccagctcaagaat
cgcccggtggcgctggtacgtgcaccagacgggctggccggggagctgttcttccagaag
aacgccggccagttgcatctgcccaacgtgctcagctatgacaaggccgaggccggccag
gcggcgatggtcatcaatcgcgccgacaccttgatcggcgcagtgcagatgaacatgctc
gaactgcacacctggaacgccacggacaaagacttcgacaagcccgaccgcttcgtcctc
gaccttgacccggacccggcactgccgtggaaggccatgctggaagccacccaactggcc
ctcaccttgctggatgaactgggcctgaaggtgtttctcaagaccagtggcggcaaaggc
atgcacctggtagtgcccctgacccggcgtgccagctgggatgaagtcaaggcattcagc
cacggcatcgtcgattacctggccaggttgttccccgacaggctcagtgccgtgtccggg
cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaacggcaagggggctacc
accgcctgcgcgtataccctgcgcgcccgcgaaggcctgccggtatccgtgccgatctgg
cgcgaggaactgccgcaactcaagggcgccaaccagtggaacatcggcaatgtgcttgaa
cgactgggcgatgtcgacgacccctgggccgattatggcaagaccaggcaatcgatcacc
gtgggcatgcgcaagcagctggggctggcctga

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