Paenibacillus polymyxa SC2: PPSC2_09820
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Entry
PPSC2_09820 CDS
T01335
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppm
Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppm03032
]
PPSC2_09820 (topA)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_09820 (topA)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPSC2_09820 (topA)
DNA replication proteins [BR:
ppm03032
]
Prokaryotic type
DNA Topoisomerases
PPSC2_09820 (topA)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPSC2_09820 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
Toprim_4
RNA_POL_M_15KD
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADO56053
UniProt:
E3EG20
LinkDB
All DBs
Position
2157600..2159702
Genome browser
AA seq
700 aa
AA seq
DB search
MADSLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EINEFVPEEYWTITAKLAIKDSTFEAKFHKLHGEKKELSSEADVQEVLEAIGKSSYKVRD
VKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIATSAQEEAKEVIVQKYGEDFVPESPRQYSKKSANAQDAHEAIRPTSALRDPETV
KPFMSRDQFRLYKLIWERFMASQMASAIMDTLSVDIEAGEAIFRAAGSKVRFPGFMKVYV
EGNDDGKTEEDKLLPPLQPGDKLKKESVEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
EGDWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVSDVICDKCGSPMVYKLGRFGKFLAC
SAFPDCRNTKPIVKDIGMNCPTCGEGHVVERRSKKGRVFYGCDRYPECDFVSWDKPSIKP
CPSCSGLMVEKRTKQGTKLNCTVCDHSEMLEESDESVETS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcactcgtcatcgtggaatcgccttccaaggcgaagacgatcggcaaatac
ttaggcagcaaatatatcgtcaaggcttccatgggtcatatcagggatttacctaagagc
cagatcggtgtagaggttgaaaatgattttaatcccaaatatattaccattcgaggtaaa
ggctcaatactaaaagagttaaaggatgcccgaaaaaaagtaaaaaaagtatatctggcg
gctgacccggatcgcgaaggcgaggctattgcttggcatctggcgcatgcgctggaactg
gacgatacggcggattgtcgtgtggtgtttaatgaaataacgaagcaggctgtcaaagat
gcttttaaaaccccccgcaagatcaacatggatttggtcaatgcgcagcaggcacgacgg
atattggatcggcttgtcggttataaaataagtccattgctctggaaaaaggtaaagaag
ggtctgtctgctgggcgtgtacagtcggttgcagtgaaaattattctggaccgggaaaac
gagatcaatgagtttgtaccggaagaatactggacgatcacagctaaattagctattaaa
gacagcacttttgaagcgaaattccataagctacacggcgaaaagaaagagctctctagc
gaagcggatgtacaagaagtgttagaagctatcggaaaatcgtcttacaaggtgcgcgat
gtgaaagagaaggagcgtttacgcaatccgtctcctccattcacaacaagttccttgcag
caagaggcggctcgaaagctcaacttccgggcatctaaaacgatgtctgtagcgcagcag
ctgtatgagggtgtggatttaggaaaagaagggactgtgggtctgattacgtatatgcgt
acggattccacacggatcgccacttcggctcaagaggaagcgaaagaggtcatcgttcaa
aaatatggcgaagattttgtgcctgaaagtcctcgtcagtattcaaaaaagtcggctaat
gctcaggatgcgcatgaagcgattcgtccaacctccgccttgcgtgatccggaaactgtt
aagccttttatgagtagagatcagttccgattgtacaaactgatatgggaacgttttatg
gcgagtcagatggcttccgctattatggatactttgtccgttgatattgaagcaggcgag
gcgatattccgagcagccggttcaaaggttcgctttccaggcttcatgaaagtgtatgtg
gaggggaatgacgacggtaaaaccgaagaagataagctgttgccgccactccaacccggc
gataagctgaaaaaggaatcggttgaaccaaagcagcattttacacaaccgcctcctcgc
tatacggaagcacgactggtgaagacgctggaggaactgggtataggacgcccgagtacg
tatgcaccgacgctggaaaccattcagaagcgcggttacgtcgctattgaggagaagaaa
ttcttccctaccgagctgggagagttggtcatcgagcagatggaagaattttttccagag
attctgaatgtagaatttacagccaatatggaaggtgatcttgaccacgtcgaagaaggc
gaaggtgattgggtcaaggtgttgagtgacttttacgagtcattcgagaagcgtctcgaa
gtggctgaagaagaaatgaaagaaattgaaattaaggatgaagtatccgacgtcatctgt
gacaagtgtggcagccccatggtgtataagctgggccgctttggtaaatttctggcctgc
tctgctttcccggattgccgtaacaccaagccaattgtcaaggatatcgggatgaattgt
cctacatgcggtgagggacatgtcgtcgaacgacgaagtaaaaaaggacgtgtcttttac
ggatgtgaccgttacccagaatgtgattttgtatcctgggataaaccgtccatcaagcct
tgtccaagttgcagtggcctaatggtcgaaaaacgtactaaacagggaacgaagctcaac
tgtaccgtctgcgatcacagcgaaatgctggaggagagcgatgagagtgtagagacttct
taa
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