Pandoraea pnomenusa DSM 16536: LV28_04575
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Entry
LV28_04575 CDS
T03411
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV28_04575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppnm03019
]
LV28_04575
03016 Transfer RNA biogenesis [BR:
ppnm03016
]
LV28_04575
Enzymes [BR:
ppnm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LV28_04575
Messenger RNA biogenesis [BR:
ppnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LV28_04575
Transfer RNA biogenesis [BR:
ppnm03016
]
Prokaryotic type
tRNA degradation factors
LV28_04575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KhpA-B_KH
DUF5813
Mt_ATP_synt
Motif
Other DBs
NCBI-ProteinID:
AIU25912
UniProt:
A0A856LGK4
LinkDB
All DBs
Position
2153797..2155953
Genome browser
AA seq
718 aa
AA seq
DB search
MQMFNKVVKSFQWGQNTVRMETGEIARQASGAVLVDMDDTVVLATVVGAKNAKPGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFYNEVQVVVQVV
SLNPEVPADIPALIGASAALAISGLPFNGPVGAARVAYVDSQYVLNPSRDQIAKSKLDLV
VAGTEQAVLMVESEAQELPEDVMLGAVVFGHEQMQTAINAIHDLVRDGGKAEWDWAPAAK
NEALIAQVAALAEGPLRAAYQTREKQARTQQLRAVTSDVIAKLGEAASAKGEAAPDDIDV
GNILFDLESKIVRSQILAGEPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVV
ATLGTKSDEQIIDALHGEYRDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALVA
CLPSADDFGYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPMTSPVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LAKMTEAQSGVRTELSEFAPRMVTIKINPEKIRDVIGKGGSVIRALTEETGTSIDISDDG
VVTIASPSAEGIAEAKRRIELITVEVEVGQVYDGTVLKLLEFGAIVSVLPGKDGLLHISE
IANERIKDINEYLKEGQSVRVKVIQQDDKGRLRLSHKALTEEEKQGGPALVKREGDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatgttcaataaagtcgtgaagtctttccaatggggacagaacacggttcgcatg
gagaccggtgagattgctcgccaggcctcgggcgccgtgctcgtcgacatggacgatacc
gtcgtgctcgccacggtcgttggcgccaagaatgccaagccgggtcaggatttcttcccg
ctgacggtcgactacctggaaaagacttacgccgccggcaagatcccgggtggcttcttc
aagcgtgaaggccgtccgtcggaaaacgaaacgctgacgtcgcgcctgatcgaccgtccg
atccgcccgctgttcccggaaggcttctacaacgaagttcaggtcgtggtgcaggtcgtc
tcgctgaacccggaagtgccggccgacattccggccctgatcggcgcatcggccgcactg
gccatctcgggtctgccgttcaacggcccggtcggtgccgcgcgcgtggcgtatgtcgac
agccagtacgtgctcaacccgtcgcgtgaccagatcgccaagtcgaagctcgatctggtc
gtcgccggtacggagcaagccgtgctgatggtggagtcggaagcgcaggaactgccggaa
gacgtgatgctgggcgccgtggtgttcggtcacgagcaaatgcaaacggccatcaacgcc
attcacgacctcgtgcgcgatggcggcaaggccgagtgggattgggccccggccgccaag
aacgaagccctgatcgcccaggtggccgcgctggcagaaggcccgctgcgcgccgcttac
caaacccgtgaaaagcaggcccgcacgcaacagctgcgcgccgtgaccagcgacgtcatc
gccaagctgggcgaagccgcgagcgccaagggcgaagcggcgccggacgacatcgacgtg
ggcaacatcctgttcgatctggaatcgaagatcgtgcgcagccagatcctcgcgggcgag
ccgcgtatcgacggtcgcgacacgcgcaccgtgcgtccgatcacgattcgcaccggcgtg
ctgccgcgtgcgcacggctcggccctgttcacgcgtggcgaaacgcaggcgctcgtggtg
gccacgctgggcaccaagagcgacgagcagattatcgacgcgctgcatggcgaatatcgt
gatcgcttcatgctgcactacaacttcccgccgttctcgacgggcgagaccggacgtgtg
ggttcgcccaagcgtcgtgaaatcggtcacggccgtctggccaagcgcgcgctcgtggct
tgcctgccgagcgccgacgatttcggttataccgtgcgcgtcgtgtcggagatcaccgag
tcgaacggctcgtcgtcgatggcttcggtttgcggcggcagcctcgccatgatggatgcc
ggtgtgccgatgacctcgccggtcgccggtattgccatgggcctgatcctcgagggcaac
aagttcgccgtgctcaccgatattctcggcgacgaagatcacctgggcgacatggacttc
aaggtggccggcacgtcgaatggcgtgaccgcgctgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctggcgcaagccaaggaaggccgcctgcacatc
ctcgccaagatgaccgaagcgcagtcgggcgtgcgtacggagctgtcggaattcgcgccg
cgcatggtcacgatcaagatcaaccccgagaagatccgcgatgtgatcggcaagggtggt
tcggtgatccgcgcgctgacggaagagacgggtaccagcatcgacatttcggacgacggc
gtggtcaccattgccagcccgagcgcggaagggatcgcggaagcgaagcgtcgcatcgag
ttgatcaccgtggaagtcgaagtgggtcaggtgtacgacggtaccgtgctcaagctgctc
gagttcggtgcgatcgtgtcggtcctgccgggcaaggacggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgagtacctcaaggaaggccagtcggtgcgc
gtgaaggtgatccagcaggacgacaagggtcgtctgcgtctgtcgcacaaggcgctcacg
gaagaggaaaagcagggtggtccggcgctggtcaagcgcgaaggcgacgcccagtaa
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