Pandoraea pnomenusa DSM 16536: LV28_14665 Help Entry LV28_14665        CDS       T03411                                  Name (GenBank) excinuclease ABC subunit A   KO K03701   excinuclease ABC subunit A Organism ppnm  Pandoraea pnomenusa DSM 16536 Pathway ppnm03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:ppnm00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     LV28_14665  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ppnm03400]     LV28_14665 DNA repair and recombination proteins [BR:ppnm03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      LV28_14665   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       LV28_14665 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ABC_tran UvrA_inter AAA_29 AAA_21 AAA_16 SMC_N nSTAND1 RsgA_GTPase AAA_22 AAA_33 AAA_23 NACHT AAA_25 AAA_18 Viral_helicase1 UvrA_DNA-bind ATPase DnaJ_CXXCXGXG DUF4350 SbcC_Walker_B RNA12 Anti-TRAP Motif Other DBs NCBI-ProteinID:  AIU27618 UniProt:  A0A378YQ45 LinkDB All DBs Position complement(5341196..5347135) Genome browser AA seq 1979 aa AA seqDB search MDKSSSKPDPSASHAIRIRGARQHNLKNLDVDLQTGEMTVVTGPSGSGKSSLVFDTLFAE GQRRYVETFSAYARQFLDRMDRPQVDHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHL KLLYARAAALFDRETAQPVRHDTPETIYADLMARTAQGDPRLVVTFPVELPASVTPDEVE QWLSASGYTRVQAEREVATAEGARKVLDVVADRFRLQNTEKARAMEAIESSLKRGRGRVN VYLPVDEGEPEIWRYSQDLHCPDSDLHYADPQPALFSFNSAYGACEACRGFGRVIGVDLG LVIPDERKTLRGGAVKTIQTPAWKEIQDDLLEYAGKAGIPRDTPWSKLSPEHREWVIEGD PEWKGEWNKQWYGIRRFFGYLESKAYKMHIRVLLSKYRSYTTCETCGGARLKTEGLLWRL GTKENADAVLPPAQRFMPRGVSWSREQLEALPGLTMHDLMLMPISRVRQFFDSLTLPSSL LDDALKLLQEEVGTRLKYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFV LDEPSIGLHPRDMDRIVAAMHRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGERGGRI VFDGTPDEVRSADTLTGSYLGGRKHVANASNWRARPVDDATPRLSLTGAREHNLKHVSVD IPLGRLVCVTGVSGSGKSTLVQDILSPALARHFGDPTEAPGAHDSLVGAEQLAGVVFVDQ SPIGKTARSNPASYVGAFDEIRKLFAAEPVALQRGYNASTFSFNSGNGRCPTCGGSGFEH VEMQFLSDVYLRCPDCDGKRYRAEVLDVKIQRAVPGEAMRELSVSDVLELTVNEAVKLFS SDRDVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQKKTASGQKVAHR GRLFIFDEPTTGLHFDDIAKLMRAFAKLLDGGNSLLVIEHNLDVVRAADWIIDLGPEGGE GGGEVLCAGTLADVVACEGSHTGRALADYERTVVAPTRTVAARAGDPGMPLQTALRAARA HRKPAGGDDIRIVNAREHNLKSLDVAIPRGKFSVITGVSGSGKSTLAFDILFNEGQRRYL ESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTTEVWHFLRLLYVK LGIQHCIHDGAPVTAQSPDSIVAQLMRDRRGQHVGLLAPLVVGRKGIYTDLAKWAKARGH THLRVDGVFLPVDPWPKLDRFREHTIELPVGDVVVTPENEGLLRTQLAAALELGKGVMHL LAPLDGLGDAMNGAQPGEGAGEGVGDIEVFSVKRACPVCGTSYPDLDPRMFSFNSKHGWC STCVGTGLALTREQREAFDDTVLNQDNRGREHSLPSQEQEPEDVGDQPCPDCHGARLNPV ARAVTFDKNAISDVAQWTVTDVRVWIQGLELKGRDASIARDLISEIQGRLEFLEEVGLGY LTLDRAAPTLSGGESQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNGILLSALRKLGDQ GNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGNVADLAAHPDSLTGQFLAHPLQ HPIAPRREVVAPAKGVDAVPPHWLTVHGATLHNLKHVTASLPLSRLTAITGVSGSGKSTL ARDVLMTNLLDAVGRSVLSSPAERRARKGAVRHAVKADGRPRAKSEASAEPRRPVVHAWH GCESVTGWETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRRLFADTLEARARGYSASRF SFNTGEGRCPACEGQGVRTIGMSFLADVKVLCDVCHGQRFNAETLAVTWRGKSIGDVLTM EVDEAVAFFASMPSIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDV TRRGQKSPHTLYVLDEPTVGLHMADVARLINVLHRLVNGGHTVVVIEHNLDVIAEADWIV DMGPEGGKDGGTVVAATSPDALARVAASHTGIALRPVLAQTPGASTAAKTSLDATATAK NT seq 5940 nt NT seq  +upstreamnt  +downstreamnt gtggataagtcctcctcgaaacccgacccgtcggccagccacgccattcgcattcgcggc gctcgccagcacaatctcaagaacctcgacgtcgatctccagaccggtgagatgacggtg gtgaccggtccttccggctccggcaagtcgagcctcgtgttcgacacgctgttcgccgaa ggtcagcgccgctatgtcgagaccttcagcgcctatgcgcgccagttcctcgaccgcatg gaccggccgcaggtcgaccatgtcgagggcgtgccgcccgcgatcgccatcgatcagacc aacccggtgcgcagctcgcgctcgacggtcggcacgatgaccgaactcaacgatcacctc aagctcctttacgcacgcgcggcggcgctgttcgatcgcgaaaccgcgcagccagtgcgt cacgacacgcccgagaccatctacgccgacctcatggcacgcaccgcgcagggggatccg cgcctggtcgtcacgttcccggtggagttgcccgccagcgtcacccccgacgaggtcgag caatggctctcggcgtcgggctacacgcgcgtgcaggccgagcgggaggtcgccacggcc gagggcgcccgcaaggtgctcgacgtcgttgccgaccggttccgtttgcagaacaccgag aaagcgcgcgcgatggaggccatcgagtcgtcgctcaagcgcggccgcgggcgcgtgaat gtctatctgccggttgacgaaggcgagcccgagatctggcgttactcgcaggatcttcat tgcccggacagcgatctgcactacgccgatccgcaacccgcgctcttctcgttcaactcc gcctacggcgcgtgcgaagcctgccgcgggttcggccgggtgatcggtgtcgatctcgga ctggtgattcccgacgagcgcaagacgttgcgcggcggcgcggtgaaaaccatccagacg ccggcatggaaggaaatccaggacgatctgctcgaatacgcgggcaaggccggcattccg cgcgatacgccctggtcgaagctctcgcccgaacatcgagaatgggtgatcgagggcgac cccgagtggaagggcgagtggaacaagcagtggtacggcattcgtcgcttcttcggctat ctcgagtcgaaggcgtacaagatgcacatccgggtgctgctctcgaagtaccgcagctac accacgtgcgagacctgcggcggcgcgcgtctgaagaccgaagggctgctgtggcgcctc ggtaccaaggaaaacgcggacgccgtgctccctcccgcacagcgcttcatgccgcgtggg gtgtcgtggtcgcgcgagcagctcgaggcattgccgggcctgacgatgcacgacctgatg ctcatgccgatttcgcgcgtgcgtcagttcttcgattcgctgaccttgccgtcgagcctg ctcgacgacgccctgaagctgttgcaggaagaagtcggcacgcgcctgaagtatctgtgt gacgtgggcatcggctacctcacgctcgatcgccagagtcgcacgctctcgggcggcgaa gtgcagcgtatcaacctgacgaccgcgctcggcacgtcgctcgtcaacacactcttcgtg ctcgacgagcccagcatcggcctgcatccgcgcgacatggaccgtatcgttgcggccatg caccggctgcgcgatgcgggcaacacgctcgtcgtggtcgaacacgatccggccgtgatg ctcgcggccgaccgcgtcatcgacatggggccgggccccggcgagcgcggcggccgcatt gtgttcgacggcacgcccgacgaggtgcgcagcgccgacacgttgaccggcagttacctg ggcgggcgcaagcacgtggccaacgcgtcgaactggcgggcgcgtcccgtcgacgacgcc acgccgcgcctctcgctcaccggtgcgcgcgagcacaacctcaagcacgtcagcgtcgac attccgctcgggcgcctcgtgtgcgtgaccggcgtgtcgggctccggaaaatcgacgctc gtgcaggacattctcagtccggcgctcgcgcgtcacttcggcgatccgaccgaggcgccg ggcgcacacgattcgctcgtcggcgccgaacaactcgcgggcgtggtgttcgtcgaccag tcgcccatcggcaaaaccgcgcgctcgaatccggcaagttacgtgggcgcgttcgacgag atccgcaagttgttcgcggcagagccggtcgccctgcaacgtggctacaacgcgagcacg ttcagcttcaactcgggcaacgggcgttgtccgacgtgtggcggttcgggtttcgaacac gtggagatgcagttcctgagcgacgtctacctgcgctgtcccgattgcgacggcaaacgc tatcgcgccgaggtgctggacgtgaagattcagcgcgccgtacccggcgaggcgatgcgc gagctaagcgtgtcggacgtgctcgagctgaccgtcaacgaagccgtcaaactgttttcc tcggatcgcgacgtgctgcgcgtattgcagccgatcgtggacgtgggccttgagtatgtg aagcttggccagccggtcccgacgctctcgggcggcgaggcccagcgcctgaagctcgcg gggtttctcgccgaggcggcgcagaagaagacggcaagcgggcagaaggtggcgcatcgc ggtcgcctcttcatcttcgacgagcccacgaccggcctgcacttcgacgacatcgccaag ctcatgcgggcgttcgccaagttgctcgacggtggcaattccctgctggtcatcgaacac aatctcgatgtggtgcgcgcggccgactggatcatcgacctggggccggaaggcggcgaa ggcgggggtgaagtgttgtgcgcgggcacgctggccgacgtcgtggcgtgcgagggctcg cacaccggccgtgcgctggcggattacgaacgcaccgtggtggcgccgacgcggactgtt gcggccagggcgggcgatccgggcatgccgctgcaaacggcgttgcgcgccgcgcgcgcg catcgcaagccggcgggcggcgacgacattcgcatcgtcaatgcgcgcgagcacaatctc aagtcgctggacgtcgccattccgcgcggcaagttcagcgtgatcaccggcgtgtccggc tcgggcaagtcgacgcttgcgttcgacatcctcttcaacgaagggcagcgccgctacctc gaatcgctcaacgcctacgcccgctccatcgtgcagccggccgggcgtccggaggtggac gccgtgtacggcattccgcccacggtggccatcgagcagcggctctcgcgcggcgggcgc aagagtaccgtggcgacgacgacggaggtttggcacttcctgcggctgctttacgtgaag ctcggtattcagcactgtatccacgacggcgcacccgtcacggcacagagtcccgattcc atcgtggcccagctcatgcgcgatcgtcgcggccagcatgtcggtttgctcgcgccgctg gtggtcggccgtaagggcatctataccgatctggcgaagtgggccaaggcgcgcggtcat acccacttgcgcgtcgacggcgtgttcctgcccgtggacccgtggccgaagctcgaccgt tttcgcgagcacaccatcgagctgccggtgggcgacgtcgtcgtcacgcccgagaacgaa gggctgctgcgcacgcaactggcggcggcgctcgaactgggcaagggcgtgatgcacctg ctcgcaccgctcgacggcctgggcgacgccatgaacggtgctcagccgggcgaaggggcg ggcgaaggggtcggcgacatcgaggtgttttcggtcaagcgcgcttgcccggtgtgcggc acgagctacccggatctcgatccgcgcatgttctcgttcaacagcaagcacgggtggtgc tcgacttgcgtcggcacggggcttgcgctcacgcgcgagcagcgcgaggcgttcgacgac accgtgctcaatcaggacaatcgcggacgcgagcattcgctgccatcgcaggagcaggag ccggaagacgtcggcgatcagccgtgtccggattgccacggcgcgcggttgaacccggtc gcgcgcgcggtgaccttcgataagaatgcgatctccgatgtcgcgcagtggaccgtcacc gacgtgcgcgtctggattcagggcctcgagctgaaggggcgcgacgcgagcatcgcacgc gatctgatcagcgagattcaggggcgtttggaattcctggaggaagtcgggcttggctat ctcacgctcgatcgcgcagcgccgacgctctccggtggcgaatcgcagcgcattcgtctc gcggcgcagctcggcagcaatctgcagggcgtttgctacgtgctcgacgaacccaccatc ggattgcacccgcgcgacaacggcattctgctcagcgcgctgcgcaagctcggcgatcag ggcaacacgctcgtggtggtcgagcacgacgaggacaccattcgccgggccgatcacatc atcgatatcggcccgggggcgggcaagcgcggcggtacgctcgtcgcgcagggcaacgtg gccgatctggcggcgcatcccgattcgctgacgggtcagttcctcgcgcatccgttgcag cacccgatcgccccgcgccgcgaggtggtggccccggcgaagggcgtcgatgccgtgccg ccgcattggctgaccgtccacggcgccacgctgcacaacctgaagcatgtcacggcgtcg ttgccgctctcgcggctcaccgcgattaccggcgtgtcgggttcgggcaagtcgaccctg gcgcgcgacgtgctgatgaccaatctgctcgacgccgtgggacgttccgtgctgtcgtcg ccggcggaacggcgcgcccgcaagggagcggtgcgccatgccgtgaaggcggacggccgt ccgcgagcgaaatcggaggcgtccgctgagccgcgtcgcccggtggtccacgcgtggcac ggttgcgaatcggtcacggggtgggaaacgatcgatcgcgtgctcgaagtggatcaaacg ccgatcggcaagacgccacgctcctgtccggcgacctacatcggcttctgggacacgatt cgccgcctgtttgccgatacgctcgaagcgcgcgcacgcggctactccgcctcgcgcttt tccttcaacaccggcgaggggcgttgtccggcatgcgaggggcaaggcgtgcgcaccatc ggcatgagcttcctggcggacgtgaaggtgttgtgcgacgtttgtcacggccagcggttc aacgccgagacgctggcggtcacgtggcgtggcaagagcatcggcgacgtgctgacgatg gaggtcgacgaggccgtggcgttcttcgcgtcgatgcccagcattgcgcatccgctgcaa ctgatgaaggacgtcgggctgggttacctcacgctgggccagccctcgccgacgctctcg ggcggtgaggcacagcgcatcaagctcgtgacggaactgaccaaggtgcgtgacgacgtc acccgccgcggacagaagtcgccgcacacgctttacgtgctcgacgagccgacggtgggc ctgcacatggcggacgtggcgcgtttgatcaacgtgctgcatcgtctggtgaacggcggg cacacggtcgtcgtcatcgagcacaacctggatgtgattgccgaggccgactggatcgtc gatatgggtccggagggtggcaaggacggcggcaccgtcgtggcggcaacttcgcccgat gcgctggccagggtggcggcgagtcacaccggcattgcgctcagaccggtgctggcgcaa acgcccggcgccagcaccgctgcgaagacatcgctcgacgcgaccgccacggcgaaatag

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