KEGG   Pandoraea pnomenusa DSM 16536: LV28_17515
Entry
LV28_17515        CDS       T03411                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppnm  Pandoraea pnomenusa DSM 16536
Pathway
ppnm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppnm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LV28_17515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppnm03400]
    LV28_17515
Enzymes [BR:ppnm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LV28_17515
DNA repair and recombination proteins [BR:ppnm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LV28_17515
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AIU28116
UniProt: A0A378YTP2
LinkDB
Position
4744064..4746694
AA seq 876 aa
MTRRDASPKRPKRPKHPKRSQRPSSSRDAPDALAAYDARRNFAATPEPRGERAAQGRAMR
YVIQRHDASHLHYDFRLELDGTLKSWALPKQPSPEVSRPRLAVQVEDHPLAYADFSGDIP
PGNYGAGHVDIWDSGTWEPHGDARRDYEDGKLSFTLHGERLDGDWTLVRTTKPARQPQWL
LIHRRDGTRHATTLQASTPAATQTRSAVARTEANTTTRTRTRKTSRQSPQSPPTTLSPML
ATLVDAAPPSAGWHAEIKLDGYRVLIRIDGDDVRVFTRSGQDWTHRFRPACDALRKCALP
NAWLDGEAVVVGAHGLPDFQALQRAFDANAQDAILIYVFDMPWCNGDDMRDMPLRERQAA
LAALFEGGETDAVRVLQPVSGELESLWHSACEAGLEGIMVKRDDSPYVAGRSDAWRKLKC
SQRQEFVVLGFTEPSGTRQGFGALLLGYYDDDGKTLRYAGKVGTGFDTDAVLRLRKRFDA
VRSPRAPLSPAPKPAGAARVRWLEPTLVAEVRFAEWTRDGNVRQASFVAMRDDKPAKDIR
REARMRGTVSALAPSRQRGRPDKETSPMPRSAKSNAEPPSLPVKITHGDRVMDTHSEVTK
AELAAYYHAVAPWMLAHLAGRPVAVLRAPEGIGGEMFFQKHAAKTMPGVHTLDPSLDPDH
AALMQIDDVRGLVGAVQMGAVEFHTWNARSDLIERPDRVIFDLDPGKGLDFAAVVEGARL
IRGLLDELGLTAFVKTSGGRGLHIVTPLARRHEWDVAKAFAEAVARHMARIFPDRFTATM
GPKHRVGKCFIDYLRNYRGATTVCAYSSRAREGMAVSMPVRWEDLTALPGADAWNVRNAV
EHVSSLRQDPWEGYDKAAQQRLTKEILTRLTRATAR
NT seq 2631 nt   +upstreamnt  +downstreamnt
atgacaagacgcgacgcgagtccgaaacgtccaaagcgcccgaagcacccgaagcgctcg
cagcgcccttcgtcgtcgcgcgacgcgcccgatgctttggccgcctacgatgccaggcgc
aatttcgcggcgacgccagaaccgcgcggcgagcgcgccgcgcaaggacgcgcgatgcgg
tatgtcatccagcgccatgacgccagtcatctgcactacgacttccggctcgaactcgac
ggcacgctgaagtcgtgggcgctgccgaaacagcccagccccgaagtcagccgcccgcga
ctggccgttcaggtggaggatcatccgttggcatacgcggatttttcaggcgacattcca
ccgggaaactacggtgccgggcacgtcgacatctgggacagcggcacgtgggagccgcac
ggcgacgcgcggcgcgactatgaggacggcaagctgtcgttcaccttgcatggcgagcgt
ctcgacggagactggacgctcgttcgcaccacgaagccggcgcgtcaaccgcaatggctg
ctgatccaccggcgcgatggcacacgccacgccaccacgcttcaggcgtcgacacccgcc
gccacgcaaacgcggtccgctgttgcgagaaccgaagcaaacaccacaacccgaacgcga
acgcgcaagacgtctcgtcaatcgccccaaagcccgccgacgacactcagcccgatgctc
gccaccctcgtcgacgcagcgccgccgtccgcgggctggcatgccgagatcaagctcgac
ggttaccgcgtactgatccgcatcgacggcgacgacgtgcgcgtattcacgcgctcgggg
caggactggacgcatcgttttcgtcccgcgtgcgacgcgctgcgcaaatgcgccctgccc
aacgcgtggctcgatggcgaagccgtggtcgtcggcgcgcacggtctacccgatttccag
gcgttgcaacgcgccttcgatgcgaacgcgcaggacgccatcctgatctacgtcttcgat
atgccgtggtgcaatggcgacgacatgcgcgacatgccgttgcgcgaacgacaggccgcg
ctcgcggcgctattcgaaggtggggaaaccgacgccgtgcgcgtgctgcaaccggtgagc
ggcgaactcgaatcgctgtggcatagcgcgtgcgaggccggactggaaggcatcatggtc
aagcgcgacgattcgccttacgtcgcgggacgcagcgatgcgtggcgcaagctcaagtgc
tcgcagcgtcaggagttcgtcgtgctcggtttcaccgaaccgtccggcacgcggcaagga
ttcggtgcgttgttgctggggtattacgatgacgacggcaagacgctgcgctacgcgggc
aaggtcggcacgggcttcgacaccgatgccgtgctgcgcctgcgcaagcgattcgatgcc
gtgcgatcgccgcgcgcgccgttgtcgcccgcgccgaagcctgccggcgccgcacgcgtg
cgctggctcgaacccacgctcgtggccgaggtgcgcttcgccgagtggacccgcgacggc
aacgtgcgccaggcgtcgttcgtggcgatgcgcgacgacaagcccgcgaaggacattcgc
cgcgaggcgcgcatgcgtggaaccgtcagcgcgctcgcgccatcccgccaacgtggtcgc
cccgacaaggagacatcgccaatgccgcgcagtgcgaaatcgaacgcagaacccccttcg
ttgcccgtgaagatcacccacggcgatcgggtgatggatacccactccgaggtcaccaag
gcggaacttgccgcgtactaccacgccgtggccccctggatgcttgcgcatctggccggg
cgcccggtggcggtactgcgtgcgccggagggtatcggcggcgagatgttcttccagaag
cacgcggcaaagacgatgcccggcgtgcacacgctcgatccctcgctcgatcccgatcat
gcggcgctcatgcagatcgacgacgtgcggggccttgtcggcgcggtgcagatgggcgcc
gtcgagtttcacacatggaatgcacgcagcgatctgatcgagcgtcccgatcgcgtcatc
ttcgacctggaccccggcaaaggcctggatttcgcggccgtcgtcgaaggcgcacggctg
attcgcggattgctcgacgagttgggcctgaccgccttcgtgaaaaccagcgggggacgc
ggtcttcacatcgtgacaccgctggcacgccgtcatgagtgggacgtcgccaaggccttc
gcggaggcagtggcccggcacatggcgcgcatatttccggatcgcttcacggcaacgatg
gggccgaagcatcgcgtggggaaatgcttcatcgactatctgcgcaattaccgcggcgcg
acgaccgtgtgcgcctattcgtcgcgggcgcgcgaaggcatggcggtatcgatgccggtt
cgctgggaggatctgaccgcattgcccggcgccgatgcatggaatgtgcgcaacgccgtg
gaacacgtctcctccctgaggcaagacccctgggagggctatgacaaggccgcgcagcag
cggttgaccaaggaaatattgacccggctgacgcgggcgacggcgcgctag

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