Pandoraea pnomenusa DSM 16536: LV28_17515
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Entry
LV28_17515 CDS
T03411
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LV28_17515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_17515
Enzymes [BR:
ppnm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LV28_17515
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LV28_17515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIU28116
UniProt:
A0A378YTP2
LinkDB
All DBs
Position
4744064..4746694
Genome browser
AA seq
876 aa
AA seq
DB search
MTRRDASPKRPKRPKHPKRSQRPSSSRDAPDALAAYDARRNFAATPEPRGERAAQGRAMR
YVIQRHDASHLHYDFRLELDGTLKSWALPKQPSPEVSRPRLAVQVEDHPLAYADFSGDIP
PGNYGAGHVDIWDSGTWEPHGDARRDYEDGKLSFTLHGERLDGDWTLVRTTKPARQPQWL
LIHRRDGTRHATTLQASTPAATQTRSAVARTEANTTTRTRTRKTSRQSPQSPPTTLSPML
ATLVDAAPPSAGWHAEIKLDGYRVLIRIDGDDVRVFTRSGQDWTHRFRPACDALRKCALP
NAWLDGEAVVVGAHGLPDFQALQRAFDANAQDAILIYVFDMPWCNGDDMRDMPLRERQAA
LAALFEGGETDAVRVLQPVSGELESLWHSACEAGLEGIMVKRDDSPYVAGRSDAWRKLKC
SQRQEFVVLGFTEPSGTRQGFGALLLGYYDDDGKTLRYAGKVGTGFDTDAVLRLRKRFDA
VRSPRAPLSPAPKPAGAARVRWLEPTLVAEVRFAEWTRDGNVRQASFVAMRDDKPAKDIR
REARMRGTVSALAPSRQRGRPDKETSPMPRSAKSNAEPPSLPVKITHGDRVMDTHSEVTK
AELAAYYHAVAPWMLAHLAGRPVAVLRAPEGIGGEMFFQKHAAKTMPGVHTLDPSLDPDH
AALMQIDDVRGLVGAVQMGAVEFHTWNARSDLIERPDRVIFDLDPGKGLDFAAVVEGARL
IRGLLDELGLTAFVKTSGGRGLHIVTPLARRHEWDVAKAFAEAVARHMARIFPDRFTATM
GPKHRVGKCFIDYLRNYRGATTVCAYSSRAREGMAVSMPVRWEDLTALPGADAWNVRNAV
EHVSSLRQDPWEGYDKAAQQRLTKEILTRLTRATAR
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgacaagacgcgacgcgagtccgaaacgtccaaagcgcccgaagcacccgaagcgctcg
cagcgcccttcgtcgtcgcgcgacgcgcccgatgctttggccgcctacgatgccaggcgc
aatttcgcggcgacgccagaaccgcgcggcgagcgcgccgcgcaaggacgcgcgatgcgg
tatgtcatccagcgccatgacgccagtcatctgcactacgacttccggctcgaactcgac
ggcacgctgaagtcgtgggcgctgccgaaacagcccagccccgaagtcagccgcccgcga
ctggccgttcaggtggaggatcatccgttggcatacgcggatttttcaggcgacattcca
ccgggaaactacggtgccgggcacgtcgacatctgggacagcggcacgtgggagccgcac
ggcgacgcgcggcgcgactatgaggacggcaagctgtcgttcaccttgcatggcgagcgt
ctcgacggagactggacgctcgttcgcaccacgaagccggcgcgtcaaccgcaatggctg
ctgatccaccggcgcgatggcacacgccacgccaccacgcttcaggcgtcgacacccgcc
gccacgcaaacgcggtccgctgttgcgagaaccgaagcaaacaccacaacccgaacgcga
acgcgcaagacgtctcgtcaatcgccccaaagcccgccgacgacactcagcccgatgctc
gccaccctcgtcgacgcagcgccgccgtccgcgggctggcatgccgagatcaagctcgac
ggttaccgcgtactgatccgcatcgacggcgacgacgtgcgcgtattcacgcgctcgggg
caggactggacgcatcgttttcgtcccgcgtgcgacgcgctgcgcaaatgcgccctgccc
aacgcgtggctcgatggcgaagccgtggtcgtcggcgcgcacggtctacccgatttccag
gcgttgcaacgcgccttcgatgcgaacgcgcaggacgccatcctgatctacgtcttcgat
atgccgtggtgcaatggcgacgacatgcgcgacatgccgttgcgcgaacgacaggccgcg
ctcgcggcgctattcgaaggtggggaaaccgacgccgtgcgcgtgctgcaaccggtgagc
ggcgaactcgaatcgctgtggcatagcgcgtgcgaggccggactggaaggcatcatggtc
aagcgcgacgattcgccttacgtcgcgggacgcagcgatgcgtggcgcaagctcaagtgc
tcgcagcgtcaggagttcgtcgtgctcggtttcaccgaaccgtccggcacgcggcaagga
ttcggtgcgttgttgctggggtattacgatgacgacggcaagacgctgcgctacgcgggc
aaggtcggcacgggcttcgacaccgatgccgtgctgcgcctgcgcaagcgattcgatgcc
gtgcgatcgccgcgcgcgccgttgtcgcccgcgccgaagcctgccggcgccgcacgcgtg
cgctggctcgaacccacgctcgtggccgaggtgcgcttcgccgagtggacccgcgacggc
aacgtgcgccaggcgtcgttcgtggcgatgcgcgacgacaagcccgcgaaggacattcgc
cgcgaggcgcgcatgcgtggaaccgtcagcgcgctcgcgccatcccgccaacgtggtcgc
cccgacaaggagacatcgccaatgccgcgcagtgcgaaatcgaacgcagaacccccttcg
ttgcccgtgaagatcacccacggcgatcgggtgatggatacccactccgaggtcaccaag
gcggaacttgccgcgtactaccacgccgtggccccctggatgcttgcgcatctggccggg
cgcccggtggcggtactgcgtgcgccggagggtatcggcggcgagatgttcttccagaag
cacgcggcaaagacgatgcccggcgtgcacacgctcgatccctcgctcgatcccgatcat
gcggcgctcatgcagatcgacgacgtgcggggccttgtcggcgcggtgcagatgggcgcc
gtcgagtttcacacatggaatgcacgcagcgatctgatcgagcgtcccgatcgcgtcatc
ttcgacctggaccccggcaaaggcctggatttcgcggccgtcgtcgaaggcgcacggctg
attcgcggattgctcgacgagttgggcctgaccgccttcgtgaaaaccagcgggggacgc
ggtcttcacatcgtgacaccgctggcacgccgtcatgagtgggacgtcgccaaggccttc
gcggaggcagtggcccggcacatggcgcgcatatttccggatcgcttcacggcaacgatg
gggccgaagcatcgcgtggggaaatgcttcatcgactatctgcgcaattaccgcggcgcg
acgaccgtgtgcgcctattcgtcgcgggcgcgcgaaggcatggcggtatcgatgccggtt
cgctgggaggatctgaccgcattgcccggcgccgatgcatggaatgtgcgcaacgccgtg
gaacacgtctcctccctgaggcaagacccctgggagggctatgacaaggccgcgcagcag
cggttgaccaaggaaatattgacccggctgacgcgggcgacggcgcgctag
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