Paenibacillus polymyxa M1: PPM_1709
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Entry
PPM_1709 CDS
T01968
Symbol
deaD1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase ydbR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPM_1709 (deaD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppo03019
]
PPM_1709 (deaD1)
03009 Ribosome biogenesis [BR:
ppo03009
]
PPM_1709 (deaD1)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPM_1709 (deaD1)
Messenger RNA biogenesis [BR:
ppo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPM_1709 (deaD1)
Ribosome biogenesis [BR:
ppo03009
]
Prokaryotic type
rRNA helicases
PPM_1709 (deaD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
Flavi_DEAD
AAA_22
AAA_30
GRP
Motif
Other DBs
NCBI-ProteinID:
CCC84646
LinkDB
All DBs
Position
1980359..1981936
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AA seq
525 aa
AA seq
DB search
MTTFAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPM
INKISKNDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEALEGKQRIIAERLLEVVEKGELNEYKGLAIQMLEQYDSVQLLSAALK
LMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGGYNSNRGGSGSKGGYG
GYNRGKEGGGYNRDSGSRYSGDRKPRPSSNGETRRPARREDSSSE
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttgcagaatttgatcttgaaccgaaggtaattcaggcgattacggagctg
gggttcgaagaagcaacacctattcaatccaaatccatcccgattgcattgcaagggaaa
gacatgattggtcaagcccaaacaggtactggtaaaactgctgcgtttggtattccgatg
atcaataaaatttctaaaaacgatgaaaaaatcagagccctgattatggctccaacacgt
gagcttgctattcaagtggctgaagaaatcgaaaaactctcccgctttaaaggtcttcgc
actttgccgatctatggtggacaagatatcgtacgccagattcgcgctttgaaaaagaaa
cctcaaattattattggtacaccaggacgtttgctcgatcacattaatcgtaaaaccatt
aagctagaagacgtaaacaccgttgttttggatgaagcagatgaaatgctggatatgggc
ttcatggaagatattcagtccattctgaagcaggttccggacgagcgtcaaacgatgctg
ttctcggctacaatgcctcctaacattaaaagattggctgagcaattccttaaagatcct
gagcatgtatccgttattcctaaacaagttagcgctccgctgattgatcaggcctatatt
gaagttcctgagcgtcaaaaattcgaagcattaagccgtttgatcgatatggaatcccca
gaacttgctatcgtattcggtcgcactaagcgccgggtagacgagctggctgaagctctg
caaaaacgtggttattccgcagatggtttgcatggtgacttgtctcaaaatcagcgtgat
gctgttatgcgtaaattccgtgacggaagtattgacgtgctcgtagcgactgacgttgct
gcccgtggtttggacgtttccggcgtaactcacgttgtgaactttgacctcccgcaagat
ccggagagctatgttcaccgtatcggacgtactggacgtgcaggtaaagaaggggaagct
tggtcattcgtaacgcctcgtgaaattgaccatttgcacttcattgaacgtgtaactcgt
caccgcattccacgtaagcctcttccaacgttggcagaagctctggaaggcaaacaacgt
atcatcgcagaacgtcttctagaagttgtagaaaaaggcgagctgaacgagtacaaaggt
ttggctattcaaatgctggagcaatatgactctgttcaactcctctccgcagctctgaag
ctgatgactggtgagaagagagaggcatctattgagttgactccagaagatccgatccgt
gcaaaacgtcgtaaacctgacgtgcgttctggcggacgcaagccttccaactatagtgga
cgcagcaacggtgggtataattccaaccgtggcggtagcggcagtaaaggtggctacggt
ggttacaaccgtggcaaagaaggcggtggctacaaccgtgattccggaagccgctatagt
ggagatcgcaaaccacgcccgagcagcaatggcgaaactcgccgtcctgcaagacgtgaa
gattcctcttctgaataa
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