Paenibacillus polymyxa CR1: X809_10465
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Entry
X809_10465 CDS
T02956
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_10465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_10465
03016 Transfer RNA biogenesis [BR:
ppol03016
]
X809_10465
Enzymes [BR:
ppol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
X809_10465
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X809_10465
Transfer RNA biogenesis [BR:
ppol03016
]
Prokaryotic type
tRNA degradation factors
X809_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
S1_2
DUF5667
Motif
Other DBs
NCBI-ProteinID:
AHC19635
LinkDB
All DBs
Position
2230414..2232516
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AA seq
700 aa
AA seq
DB search
MEQRVEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CEPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTK
DAIMMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVN
SEVRAYAAERLMEAVKIAEKHARQEAIDAVNEETVAHFESQYIETPELLSDVSEVLYDIV
KEEVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDI
QGMEDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMMEAI
QKPREQLSQYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTN
QEMNEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAK
VEDVIAIGDTITVKVTEIDQQGRVNLSRKAVLTAEAPAKS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacgcgtagaaatgcagctcggcggaagaaagctggtgctggaaacaggacgt
cttgcgaaacaagccaatgcggcagttaaagtgagctacggagaaacagttgtgctttgt
accgtgaccgcttcccgtgaaccgaaagatttggacttttttcccctgaccgtaaactat
gaggaaagattgtatgctgtagggaaaattcctggcggatttattaaacgtgaaggacgt
ccgagtcaaaaagcgattttgtcgagccgtttgacagaccgtccaattcgtccattgttc
ccggaaggtttccggaatgatgtacaggtgttgaacctggttatgagtgtcgaccaggat
tgcgaacctgaaattgcagcaatgatcggaacctcggcagcacttagcatttcggatgta
ccttttaatgggccaatcggtggagtcgctgtaggacgtgtagacgggcaatttgtgatt
aacccggatattgcacagcagaatgcaagcgatctgtacctggttgtagccggaacgaaa
gatgccatcatgatggtagaagccgagggcaatgagattccagaggaagttatgctggaa
gctattatgttcggtcatgatgagattaagaacattgtggcagtcattgaacaattggtg
caagtagcaggtaaagagaaaatgcaggttaaactgcatgctgttgatgaaaaagtgaac
agtgaagtacgtgcttatgcagctgaacgtttaatggaagctgttaaaattgcagaaaaa
cacgcccgtcaagaggcgattgatgcagtcaacgaagagacagttgctcattttgaatca
caatacatagagacacctgagcttttgagcgacgtgagcgaagttctctatgatatcgtc
aaggaagaagtacgtcgtctgatcacgcatgataaagtgcgtcctgatggtcgtaagctt
gacgaaattcgtccgattgaaagcgacactagcattttgccgcgtactcatggttcgggc
ttatttacacgcggtcaaacgcaagcacttagcatttgtacacttggtgcattgggtgat
gtacaaattttggacggtattgatttggaagaaacaaaacgcttcatgcatcattacaat
ttcccgccattcagcgtaggtgaggctcgtcctttgcgtgcgccaggccgtcgtgaaatc
ggacatggtgctcttggtgaacgtgcactttccaaagtgattccttccgaaactgaattt
ccatacaccatccgtttggtttccgaggtactggaatcgaatggttcgacttcacaagct
agtatttgtgcaagtacactggctatgatggatgcaggtgtaccgattaaagctccggtt
gcaggtgtagcgatgggattaatcaaggatggagaccatgtttccgtattgactgatatc
caagggatggaagaccacctgggcgatatggactttaaagttgctggtaccgcggaaggc
gtaactgccattcaaatggatattaaaattaacggtattgaccgccagattttacaggat
gcgctcaagcaagctaaagaaggacgcttattcattcttagcaaaatgatggaagcgatc
cagaagccacgtgagcagttgtctcagtatgctccaaaaattatgacgatgcacattaac
ccggacaaaatccgtgatgttattggagctggtggtaaaatcatcaacaaaatcatcgaa
gaaaccggcgtgaaaatcgatattgaacaagatggtcgtgtgttcatcgcttccacaaat
caagagatgaatgaaaaagcacgttccattattgagggtatcgtaaaggaagtcgtggtc
ggtgagatttacatcggtacagtaaaacggattgagaaattcggtgcatttgttgaaatt
ttaccgggcaaagatggtctggttcatatttctcaactgtctactgaacgtgtagccaag
gttgaagatgtaattgctattggggatacaattacggtgaaagtaaccgaaattgatcaa
caaggtcgtgtcaatctgtcccgtaaggctgttctgactgcagaagcacctgcaaaatcc
tag
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