Physcomitrium patens (spreading earthmoss): 112276680
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Entry
112276680 CDS
T01041
Name
(RefSeq) formamidopyrimidine-DNA glycosylase-like
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112276680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112276680
Enzymes [BR:
ppp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
112276680
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
112276680
DNA repair and recombination proteins [BR:
ppp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112276680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
AT_hook
NFACT_N
Fpg-like_C
Ribosomal_S13
DUF4239
Motif
Other DBs
NCBI-GeneID:
112276680
NCBI-ProteinID:
XP_024363988
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All DBs
Position
24:13330841..13336487
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AA seq
518 aa
AA seq
DB search
MAELPEVEAAKRLVNCHCLGATIVKAIVDNDTKVIDGVTPAVLQETLTGKKIVSALREGK
HIWLQLDSRPWPSYQFDTSSAFIVKGAKGSQYRSPKVSDEEEAFPTTHSKVLLQLDNGVE
VAFTDKLRFGRVRLLDNPSIAPPISELGFDAYLELPNAEQFTEALKTKKGSVKALLLDQS
FLSGIGNWVGDEVLFQAKIHPEQSVNSLTEEQVAKLHTAIREVLDKAVSVDGDKEQYPRS
WLCHHLGDKKLGMIDGNQIETISFSGRTSVFVPNIQKYTGPELKGAKTSQAIDEDAVTDP
DSDGENVEEVTEGSAAEKGASGVKTGVTETPKRGRGRPPKNKGDSSAKSHATASPAAAPG
AKKRGRPPKLKTPSRASDGEEGGKDSEPAKRRGRPPKAKTDASKESVSKSSEEAPASGGK
GGKPAAGEADLASPLTPKRRGRPPKAKPEAAEEVEVAKKAKVEEAGATPKRRGRPPKVKS
EAEGEDDSVEAQTQFAEAAATTPTPKKRGRPPKAKSSS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggctgagctaccagaggtggaggcggccaaaaggctggtgaactgccactgccttggg
gcgacgatagtgaaggccattgtggacaacgacactaaagttatcgatggagtgacgccg
gctgtgctccaggaaactctgacgggtaaaaagattgtaagcgcccttcgagagggcaag
catatttggctgcaactcgattctcgtccgtggccctcctaccagttcgacacgagcagt
gcgttcattgtcaagggtgccaagggctcacagtataggagccccaaagtgagcgacgaa
gaagaagcgtttccgacaactcactcgaaagtacttttgcagctggacaacggagtggag
gtggcatttactgacaaacttcgctttggccgcgtacgcctccttgataatccttcgata
gcgccgcccatttccgagctaggattcgatgcctatcttgagcttccaaatgcggagcag
tttactgaagcattgaaaaccaagaaaggatctgtgaaagctcttcttcttgatcagagt
tttctttcaggcataggaaattgggtgggagatgaagtgctgtttcaggcaaaaatacat
cctgaacagtcggttaattcattgacggaggagcaagttgccaaattacacacagccatc
agggaggttttggataaggcggtttccgttgatggagataaggagcaatatcctcgaagt
tggctttgtcatcatcttggggacaagaagcttggaatgattgatggaaatcagattgag
acgataagcttcagcggaaggacgtcagtattcgttcccaacatacagaagtatactgga
cctgagctgaaaggtgctaagacgagtcaagctattgacgaggatgcggtgacagaccct
gattccgacggtgagaatgtagaggaagtcaccgaagggtcagcagctgaaaaaggggcg
agcggggtgaaaacgggcgtcaccgaaacaccgaagcgtggcaggggaagacctccgaaa
aacaaaggcgacagctcagctaagagtcatgcgaccgccagtcctgctgcggctccagga
gcaaagaagcggggtagacctccgaagctgaaaactccctctcgcgctagcgatggagag
gaaggtggaaaggatagtgagcctgccaaacgaagaggccgacctccgaaggcaaaaaca
gatgcttctaaggaatcagtcagcaagtcttcggaagaggctcctgcctcgggaggcaag
ggtggcaagccggctgcaggtgaagctgatctagctagtcctctaaccccgaaacgcagg
ggtaggccaccgaaggctaaacctgaagctgcagaagaggtggaagttgcgaagaaggcc
aaagtagaggaggctggtgctacaccaaagcgtagaggtcggcctccgaaggttaaatct
gaagctgagggtgaagatgactcggtagaggctcaaacacagtttgccgaagccgccgct
acgacgccaacgccgaagaagagaggccgtccaccaaaggcgaaatcgtccagctga
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