Physcomitrella patens subsp. patens: 112290811 Entry 112290811         CDS       T01041                                  Definition (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism ppp  Physcomitrella patens subsp. patens Pathway ppp03030   DNA replication ppp03410   Base excision repair ppp03420   Nucleotide excision repair ppp03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ppp00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     112290811    03410 Base excision repair     112290811    03420 Nucleotide excision repair     112290811    03430 Mismatch repair     112290811  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ppp03032]     112290811    03400 DNA repair and recombination proteins [BR:ppp03400]     112290811 Enzymes [BR:ppp01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      112290811     6.5.1.6  DNA ligase (ATP or NAD+)      112290811     6.5.1.7  DNA ligase (ATP, ADP or GTP)      112290811 DNA replication proteins [BR:ppp03032]  Eukaryotic Type   DNA Replication Elongation Factors    Other elongation factors     112290811  Prokaryotic Type    Elongation factors (archaeal)     Other elongation factors      112290811 DNA repair and recombination proteins [BR:ppp03400]  Eukaryotic Type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      112290811    NER (nucleotide excision repair)     Other NER factors      112290811    MMR (mismatch exicision repair)     Other MMR factors      112290811 SSDB Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Other DBs NCBI-GeneID:  112290811 NCBI-ProteinID:  XP_024393289 LinkDB Position 13 AA seq 776 aa MAGKKSAFEFMMGNARKGSSKEKGCPSASLAEKAKEVIKESVKETIKEEADEKMEDISVM DIDVKMEDKKVITSSTTDSVAPSTKEAKRKGRPPASSVAKAKQVVKESETATIKEEVDAK MEEKKVVASTAAEAVVLLTKKETDFDPEAAAFWKPGQPVPFLFLASALDIISDESGRLAM TNILCNVFRTVIATTPKDLLAVVTLSANRIAPAHEGVELGIGDAAIVRVLTEAYGRKADQ IKAQMKTLGDLGLVAKASRTSQRTMFKSQPLTCAKVLDTFREIAKDSGNQSQDRKRGRMK ALLVAATECEPLYLVRLLQSKLRIGLAEKTVLAALAHAAVLSEVPRVPANQLTARLEEAE EIMKETYSVLPIYEKIISAILEHGIRKLPEVCNFTLGIPVGPMLAKPTTGVSEVLNKFQD MEFSCEYKYDGERAQVHYLQGGTIEIYSRNAEHNTGKFPDIVAAMPRCMKTGTETYVLDC EVVAYDREKNKILPFQVLSTRARKGVVLSDIKIQVCLFAFDLLYLNGRPLLKEQLNVRRE LLYSSFQEIPGEFQFATAKNSNDLEEIQKFLEDAINDSCEGLIVKTLSKDATYEPAKRSN NWLKLKKDYMNTGGGDSLDLVPIGAFYGRGKRVGVYGAFLLACYDEDREEFQSICKIGTG FTEAVLEERSVTLKNHVIPQPRSYYRYGETIGVDVWFEDVEVWEVKAADLSISPVHRAAV GLVDPNKGISLRFPRLMRLREDKTPVEATSAQQVAEMYRAQKINHGHGGDADDDDD NT seq 2331 nt   +upstreamnt  +downstreamnt atggcagggaaaaaatctgccttcgaatttatgatggggaacgcccggaagggcagttcc aaagagaagggttgcccctcggcatcattggctgaaaaggccaaagaggtaattaaggag tctgtgaaggagactatcaaagaggaggccgatgagaagatggaagacatttcggtgatg gatattgatgtgaagatggaggacaagaaagtcataacctcttcaaccacagactcggta gcgccatcaaccaaggaggctaagcgaaagggtcggcctccggcatcgtcagtagcaaag gccaagcaggttgttaaggagtctgagacggcgaccatcaaagaggaggttgatgcgaag atggaggagaagaaagtagtggcgtctacagctgccgaagcggtcgtgctattaaccaag aaggagacagattttgaccctgaagctgctgcattctggaagccggggcaacccgtgcca ttcttatttcttgccagcgctcttgatatcatttcagatgagtcagggaggctagcaatg acgaatattttgtgcaatgtatttcggacggttattgcaaccacgccgaaggatctcctg gcagtcgtgaccttgtcagcaaataggattgctccagctcatgagggtgtggagcttggt atcggtgatgcggccattgtcagagtccttactgaggcgtatggaagaaaggctgaccaa attaaagctcagatgaagacattgggggaccttggtctcgttgcaaaggctagtcgaact tcgcagaggaccatgttcaaatcacaacccttgacgtgtgcaaaagtactggatacattt cgcgagattgctaaggatagcggcaaccagagtcaggacaggaagcgtggaagaatgaaa gctcttcttgtagcagccacagaatgtgagccattataccttgtccgcctgcttcagtcc aaactacgcataggtttggcagagaaaaccgtgctagcagctctggcgcacgcagcggtg ctttctgaggtccctcgagttcctgctaatcagctgactgctaggttagaagaggcggaa gaaataatgaaggaaacctactcagtgcttcctatatacgaaaagattataagcgcaata ttagaacatggtatccgcaagctacctgaagtttgcaattttactttgggtatacctgtt ggacctatgctagctaagcctacaaccggggtttctgaagttctcaacaaatttcaggac atggagttttcatgtgaatataaatatgacggtgaaagagctcaggtacattatctgcaa gggggcacaattgagatatacagtagaaatgctgaacacaacactgggaagtttcctgac atcgttgcagcaatgcccaggtgtatgaaaactggaactgaaacatatgtacttgattgt gaagtagtcgcttacgatcgagagaagaataagatattgccctttcaggttttgagcacc cgagctcgaaaaggggtcgtgttgagcgacatcaaaatacaagtgtgtcttttcgcgttt gatcttctgtacctgaatggccgtccattgttgaaggagcagttgaatgttcgaagagag ttgctgtactcctcgtttcaagagataccaggagagtttcagttcgcaactgcaaagaac tcaaatgatttggaggagattcaaaagtttctagaagatgctataaatgacagttgtgaa gggctaattgtgaagacattgtcaaaagacgcaacttatgaacctgctaagcgttcgaac aattggctcaagctcaagaaagattacatgaatactggaggtggagattccttggatctt gtaccgattggagcgttctatggtcgtggaaaacgcgtcggtgtttatggcgcgttcttg ttggcatgttacgatgaagatcgggaagagtttcaaagcatctgcaaaattggaacggga ttcacagaggctgtgctggaggaacgttctgtgaccctgaagaatcatgtcatacctcaa ccgaggtcctattacagatatggggagacaattggagtagatgtttggtttgaagatgtt gaggtctgggaggtgaaggctgctgatttgagtattagccctgtccatcgagcagctgtg ggattggttgatcccaataaggggatttcgttgcgttttccaaggttgatgagattacgg gaagataaaacgcctgttgaagcgacttcagcacagcaggtcgcagaaatgtatcgagct cagaagatcaaccatggccatggtggagacgccgacgatgacgatgattag

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