Physcomitrella patens subsp. patens: 112290811
Entry
112290811 CDS
T01041
Definition
(RefSeq) DNA ligase 1-like
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppp
Physcomitrella patens subsp. patens
Pathway
ppp03030
DNA replication
ppp03410
Base excision repair
ppp03420
Nucleotide excision repair
ppp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112290811
03410 Base excision repair
112290811
03420 Nucleotide excision repair
112290811
03430 Mismatch repair
112290811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppp03032
]
112290811
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112290811
Enzymes [BR:
ppp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112290811
6.5.1.6 DNA ligase (ATP or NAD+)
112290811
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112290811
DNA replication proteins [BR:
ppp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112290811
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112290811
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112290811
NER (nucleotide excision repair)
Other NER factors
112290811
MMR (mismatch excision repair)
Other MMR factors
112290811
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Other DBs
NCBI-GeneID:
112290811
NCBI-ProteinID:
XP_024393289
LinkDB
Position
13
AA seq
776 aa
MAGKKSAFEFMMGNARKGSSKEKGCPSASLAEKAKEVIKESVKETIKEEADEKMEDISVM
DIDVKMEDKKVITSSTTDSVAPSTKEAKRKGRPPASSVAKAKQVVKESETATIKEEVDAK
MEEKKVVASTAAEAVVLLTKKETDFDPEAAAFWKPGQPVPFLFLASALDIISDESGRLAM
TNILCNVFRTVIATTPKDLLAVVTLSANRIAPAHEGVELGIGDAAIVRVLTEAYGRKADQ
IKAQMKTLGDLGLVAKASRTSQRTMFKSQPLTCAKVLDTFREIAKDSGNQSQDRKRGRMK
ALLVAATECEPLYLVRLLQSKLRIGLAEKTVLAALAHAAVLSEVPRVPANQLTARLEEAE
EIMKETYSVLPIYEKIISAILEHGIRKLPEVCNFTLGIPVGPMLAKPTTGVSEVLNKFQD
MEFSCEYKYDGERAQVHYLQGGTIEIYSRNAEHNTGKFPDIVAAMPRCMKTGTETYVLDC
EVVAYDREKNKILPFQVLSTRARKGVVLSDIKIQVCLFAFDLLYLNGRPLLKEQLNVRRE
LLYSSFQEIPGEFQFATAKNSNDLEEIQKFLEDAINDSCEGLIVKTLSKDATYEPAKRSN
NWLKLKKDYMNTGGGDSLDLVPIGAFYGRGKRVGVYGAFLLACYDEDREEFQSICKIGTG
FTEAVLEERSVTLKNHVIPQPRSYYRYGETIGVDVWFEDVEVWEVKAADLSISPVHRAAV
GLVDPNKGISLRFPRLMRLREDKTPVEATSAQQVAEMYRAQKINHGHGGDADDDDD
NT seq
2331 nt
+upstream
nt +downstream
nt
atggcagggaaaaaatctgccttcgaatttatgatggggaacgcccggaagggcagttcc
aaagagaagggttgcccctcggcatcattggctgaaaaggccaaagaggtaattaaggag
tctgtgaaggagactatcaaagaggaggccgatgagaagatggaagacatttcggtgatg
gatattgatgtgaagatggaggacaagaaagtcataacctcttcaaccacagactcggta
gcgccatcaaccaaggaggctaagcgaaagggtcggcctccggcatcgtcagtagcaaag
gccaagcaggttgttaaggagtctgagacggcgaccatcaaagaggaggttgatgcgaag
atggaggagaagaaagtagtggcgtctacagctgccgaagcggtcgtgctattaaccaag
aaggagacagattttgaccctgaagctgctgcattctggaagccggggcaacccgtgcca
ttcttatttcttgccagcgctcttgatatcatttcagatgagtcagggaggctagcaatg
acgaatattttgtgcaatgtatttcggacggttattgcaaccacgccgaaggatctcctg
gcagtcgtgaccttgtcagcaaataggattgctccagctcatgagggtgtggagcttggt
atcggtgatgcggccattgtcagagtccttactgaggcgtatggaagaaaggctgaccaa
attaaagctcagatgaagacattgggggaccttggtctcgttgcaaaggctagtcgaact
tcgcagaggaccatgttcaaatcacaacccttgacgtgtgcaaaagtactggatacattt
cgcgagattgctaaggatagcggcaaccagagtcaggacaggaagcgtggaagaatgaaa
gctcttcttgtagcagccacagaatgtgagccattataccttgtccgcctgcttcagtcc
aaactacgcataggtttggcagagaaaaccgtgctagcagctctggcgcacgcagcggtg
ctttctgaggtccctcgagttcctgctaatcagctgactgctaggttagaagaggcggaa
gaaataatgaaggaaacctactcagtgcttcctatatacgaaaagattataagcgcaata
ttagaacatggtatccgcaagctacctgaagtttgcaattttactttgggtatacctgtt
ggacctatgctagctaagcctacaaccggggtttctgaagttctcaacaaatttcaggac
atggagttttcatgtgaatataaatatgacggtgaaagagctcaggtacattatctgcaa
gggggcacaattgagatatacagtagaaatgctgaacacaacactgggaagtttcctgac
atcgttgcagcaatgcccaggtgtatgaaaactggaactgaaacatatgtacttgattgt
gaagtagtcgcttacgatcgagagaagaataagatattgccctttcaggttttgagcacc
cgagctcgaaaaggggtcgtgttgagcgacatcaaaatacaagtgtgtcttttcgcgttt
gatcttctgtacctgaatggccgtccattgttgaaggagcagttgaatgttcgaagagag
ttgctgtactcctcgtttcaagagataccaggagagtttcagttcgcaactgcaaagaac
tcaaatgatttggaggagattcaaaagtttctagaagatgctataaatgacagttgtgaa
gggctaattgtgaagacattgtcaaaagacgcaacttatgaacctgctaagcgttcgaac
aattggctcaagctcaagaaagattacatgaatactggaggtggagattccttggatctt
gtaccgattggagcgttctatggtcgtggaaaacgcgtcggtgtttatggcgcgttcttg
ttggcatgttacgatgaagatcgggaagagtttcaaagcatctgcaaaattggaacggga
ttcacagaggctgtgctggaggaacgttctgtgaccctgaagaatcatgtcatacctcaa
ccgaggtcctattacagatatggggagacaattggagtagatgtttggtttgaagatgtt
gaggtctgggaggtgaaggctgctgatttgagtattagccctgtccatcgagcagctgtg
ggattggttgatcccaataaggggatttcgttgcgttttccaaggttgatgagattacgg
gaagataaaacgcctgttgaagcgacttcagcacagcaggtcgcagaaatgtatcgagct
cagaagatcaaccatggccatggtggagacgccgacgatgacgatgattag
DBGET
integrated database retrieval system