Physcomitrium patens (spreading earthmoss): 112296112
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Entry
112296112 CDS
T01041
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
KO
K14962
COMPASS component SWD2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112296112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112296112
03036 Chromosome and associated proteins [BR:
ppp03036
]
112296112
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112296112
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
112296112
COMPASS/SET1 complex (yeast)
112296112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
PQQ
PQQ_2
Cytochrom_D1
RMC1_N
Motif
Other DBs
NCBI-GeneID:
112296112
NCBI-ProteinID:
XP_024404060
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All DBs
Position
19:2230797..2235111
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AA seq
328 aa
AA seq
DB search
MEVKRKMALELNDVVIKSMGMGAVFKDYGAKINSLDFHRTEDLLVTASDDESIRLYDFAN
ATLLKTIHSKKYGVDQICFTHHTNSVIYSSKKDSDESLRYLSLYDNRYLRYFKGHRDRVV
SLCMSPKNDCFMSGALDHTVRLWDLRTNVCQGLLRVRGRPAVAYDQQGLVFAVAMEGGAI
KLFDVRSYDKGPFDTFLVGGDTAEVSGMKFSNDGKLMLLSTSNGHVYVVDAYSGKKLHGF
SLEPNPDGGVLEASFSPDAQFVIAGSGDGTLRTWSTLSGVEVSCWANNAGVPACVKWAPR
RFMFATASMALAFWIPDLTKLQRTDIGL
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcaagcggaaaatggcgttggagctaaacgacgtggtgatcaagagcatgggc
atgggcgctgttttcaaggattatggagcgaagataaattcactcgattttcatcgaacc
gaagaccttcttgtcactgcctccgacgatgagtccatacgtctttatgatttcgcaaat
gccacgttgctgaaaacaattcacagtaagaagtacggagttgaccaaatttgcttcact
catcatacaaactccgtaatatattcttctaagaaagattcggatgagtctctacgatat
ttatcgttatacgacaatcgatatttgcgctatttcaaagggcatcgcgacagggtggtg
tcattatgcatgtcaccaaagaacgactgcttcatgtctggtgcactggaccacaccgta
cgtttgtgggatctacgcaccaatgtgtgtcagggactattgcgtgtgaggggtagaccc
gctgttgcgtatgatcagcagggtcttgtatttgctgtggctatggaaggtggagctatt
aagctctttgacgtacgctcctatgacaaggggcctttcgatacatttttggtaggaggt
gatacagctgaagtgtctgggatgaaatttagcaatgatggcaagcttatgctactgtca
acatcaaacggtcacgtatatgtggttgatgcgtacagtgggaaaaagcttcatggcttt
tctttggaacccaatcctgatggcggagtattggaggcttcattcagtcccgacgcacag
tttgtaattgcaggttcgggtgatggcactttgcgaacatggagtacgctgtctggtgtg
gaggtttcgtgctgggcaaataatgcaggagtgcctgcgtgtgtgaagtgggcacctcgc
cgatttatgtttgctacagcttcaatggcattagctttctggattcctgatctaacgaaa
cttcagagaacagatatcggtctttga
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