Paenibacillus polymyxa SQR-21: PPSQR21_000200
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Entry
PPSQR21_000200 CDS
T03178
Symbol
dnaX
Name
(GenBank) DNA polymerase iii, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03030
DNA replication
ppq03430
Mismatch repair
ppq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSQR21_000200 (dnaX)
03430 Mismatch repair
PPSQR21_000200 (dnaX)
03440 Homologous recombination
PPSQR21_000200 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_000200 (dnaX)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_000200 (dnaX)
Enzymes [BR:
ppq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSQR21_000200 (dnaX)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPSQR21_000200 (dnaX)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPSQR21_000200 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AHM63749
LinkDB
All DBs
Position
22911..23906
Genome browser
AA seq
331 aa
AA seq
DB search
MSFQHILGQDVAKKMLQSALRNHTVSHAYVFSGPQGSGQLNMAQTFAKALFCEKQTDDAC
GECLSCRKVEHGNHPDLHIVEPDGATVKIDQIRGLQRIFSYKSESSNPKVYIIRQADTMT
VQAANSLLKFLEEPQIPVVGILISENGQALLPTIQSRTQQVPFHALQPEMMMQVLIGEGY
TAGLVRSVVHMASGLESCREILQQNWFAEIRNVVLQLVKESMSRGSSSIILAQQKIFKTG
LSEHLDILFHLFHLWFKDMLHFRYGRHESIVFIDHLESVSKLAITRSTEQWVSYMDLAAN
CRKKLRFHVNGQLCVEQLLIGLSDTSGSITG
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccaacatatattggggcaggatgtagccaaaaaaatgctgcaaagtgcattg
cggaatcacacagtcagccatgcttatgtttttagcggaccgcagggaagcggacagctg
aacatggcacagacctttgccaaggctttattctgtgaaaaacagacggatgatgcatgt
ggcgagtgcttgtcatgccgcaaggtagagcacgggaatcacccggacttgcacattgtg
gagcctgatggagcaacggttaaaatcgatcagattcgcgggcttcaacgaatattttca
tacaaatctgaaagctccaacccgaaggtatatatcattcgacaggcggataccatgaca
gtgcaagctgctaacagcttgcttaagtttttggaggagcctcagattcccgtggtcggt
atactcatttcagagaatggacaggcgttgttgcctacgattcaatcgcggacacagcag
gtgcctttccacgctttacagccggaaatgatgatgcaggtgttaattggggaaggctat
acggcaggacttgtccggtcagtggttcatatggcttcaggactggaatcatgtagagaa
attctccagcagaattggtttgcagaaattagaaacgtagtgttacaattagtgaaggag
tccatgagccgggggagttcgtcgattattctggctcaacagaagatttttaaaactgga
ctttctgaacacctggatattctgtttcatctgtttcatttgtggtttaaagatatgctt
catttccgttacggaaggcacgaaagcattgttttcatagatcatttggagtccgtctcc
aaattggcaatcacccgcagcacggaacaatgggtctcttatatggatttggccgcgaat
tgcaggaagaagctccgttttcacgtcaacggacaattatgcgtggagcagcttctgatt
gggttgtccgatacaagcggttctatcaccggctaa
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