Photobacterium profundum: PBPRA2998
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Entry
PBPRA2998 CDS
T00173
Symbol
Y3164
Name
(GenBank) putative exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PBPRA2998 (Y3164)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA2998 (Y3164)
Enzymes [BR:
ppr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PBPRA2998 (Y3164)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PBPRA2998 (Y3164)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_25
AAA_11
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAG21332
UniProt:
Q6LMZ4
LinkDB
All DBs
Position
1:complement(3435441..3439124)
Genome browser
AA seq
1227 aa
AA seq
DB search
MQPDLNVQSGLDNPSDLNHQPMDSANTPTTLQPMTFPLHGARLIEASAGTGKTFTIASLY
LRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRARIHDAQIAFRRGFSNDPV
IAPLLTAIRDHKAAAQILLNAERQMDEAAIYTIHGFCQRMLTQNAFESGSRFNNEFVTDE
SQLKSLVAADYWRRNFYHLPHALANEVRNIWSSPAALLKDIGGSLTGAPVKLSVAAMSDS
LADLHQQNMQRLDAIKALWRDHEADLEPLIANSGVNKRSYTKKSLPTWLAQVSQWAAQPT
DSYELPDKLDRFHQHTLIDKTAKGEAPKHAVFVAIGELLDNPANLHDPLMAHAIEQCRVL
LVQAKERKGWLSFDDLLTQLSAAIDNDQDDLLAGRIRSQYPVAMIDEFQDTDPQQYSIFS
NIYRDQPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVHDHYTLDTNWRSTADMIASVN
SVFARPESPFIYDQDIQFLSVNHSSKAPDRSWWLDNQAQHALTFWHQDSPDGKPVTKGSY
QEAMANATAAQIQNVLTQAEQGSAFFLDKDSKKAIQASDVAVLVRTGNEGKLVRKALSEQ
GIASVYLSNRDSVFSTAEAADIQRLLQAVLTPEDDRALRAALASSLFALTAVELDQLNNS
ENAWEAAINNFKEYRKQWLTRGVMAMIRSVMAKEKMAENLLAEEGGERRLTDLLHIAELL
QEASQTLDSDYGLLRWLAEHVAEPNGNAEDQVLRLESERNLVQIVTIHKSKGLEYDLVFM
PFVCSYREVDSKGEVKYHDEAENITVLDIAKQADSIEKADKERLAEDLRLIYVALTRAVY
GCYIGMAPIRNGRSTKEPTGLHHSAMGHLIQNGKEGTIADLELALAKLAESQPAITIVEP
PVLPEEKWQPLDQEDAELSPNQFTMSLERNWWMTSYSSLVKQGHQAYHDSSLDLPGFDIE
SAAETAIDGEASVDHDGNLVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTAPVDSPETV
ATLTDLLQKENYDLVWLPVLQQLIKDVLNCSLDGQGMKLVDKNPSQRLTEMEFLLPITLL
SSRMLNKVIAKHDTVSAKAGELGFATVSGMLKGFIDLVFEHDGKYYVLDWKSNHLGDDPS
VYRGAQLVEAMRDHRYDLQYQIYALALQRFLRSRMPNYDYETHFGGVFYLFLRGMEAGSD
SGIFHARPSEALLLELEQLIDGEQIDA
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccagatttgaatgtgcaatcaggcttggataacccgtcagacttgaatcatcaa
ccaatggacagtgcgaatacacccactacattgcagccgatgactttcccactgcatggt
gcacgtttaattgaagcctctgctggcacaggaaagacgtttaccattgcgagtttatat
ttacgtttactgctggggcatggtaacgctgaaacgcgccatgcatcagagctgactgtt
gatcaaattctggtggtgacgtttactgaagcggcaactgccgagttaagagatcgtatt
cgtgcgcgaattcatgatgctcaaatcgcatttcgtcgtggctttagtaacgatccggtt
attgcaccgctattaaccgccattcgcgatcataaagcggcggcacaaattctgttgaat
gcagaacgccaaatggatgaagcggccatttataccattcacggtttctgccagcggatg
ttgacccaaaatgcgtttgaatcgggcagtcgctttaataatgaatttgttaccgatgaa
agccagttgaaaagcttggtagctgccgattattggcgtcgaaatttttaccacctacct
catgcgttagccaatgaagtccgcaatatttggtcatctccggcggcattgttaaaagac
atcgggggcagcttaaccggtgcgcctgtgaagttgtcagttgcggcaatgagcgattcg
ttggctgatttgcatcagcaaaacatgcagcgtctcgatgcgattaaagcactatggcgt
gatcatgaagcagaccttgaacctctgatcgccaattcaggggttaataagcgcagttat
accaaaaaaagcttaccgacttggctggcacaggtgagtcagtgggcagcacaacccacc
gatagttatgaactgcccgataaattggatcgctttcatcagcacacattaatcgacaaa
accgcgaagggtgaagcgcctaagcatgcggtatttgttgccattggtgagttgctcgat
aatccggctaacttgcatgatcctttaatggcgcatgccatcgaacaatgtcgtgtgttg
ttggtgcaagcaaaagagcgtaaagggtggttatcgtttgatgacttgttaacccaatta
tctgctgcgatcgataacgatcaagatgatctgctggctgggcgtatacgtagtcagtat
ccggtcgcaatgattgatgaattccaagataccgatccacagcaatacagtattttcagt
aatatttatcgtgatcaaccggaatgcggtttgtttatgatcggcgatcctaagcaggcg
atttatgccttccgaggcgcagatattttcacgtacatccaagctcgtcgtcaggtacac
gatcattacacgctcgatactaactggcgttcaacagcagatatgattgcgtcggtaaac
agtgttttcgctcgacccgagagcccgtttatttacgatcaagatattcaattcttatcg
gttaaccatagctctaaagcccctgaccgtagctggtggttagataaccaagctcaacat
gccttgacgttctggcatcaagacagccctgatggtaagcctgtcacgaaaggcagttat
caagaagcgatggcgaatgcgaccgcggcacaaattcagaatgtgctgactcaagcagag
caaggcagtgcttttttcctagacaaagacagtaaaaaagcaattcaagccagtgatgtt
gcggtgctagtacgtactggtaatgaaggtaaattagtacgaaaagcattgtcagaacaa
ggtattgccagtgtgtatctatcaaaccgtgatagcgtgttttcaaccgctgaagcggcg
gatattcaacgtttattacaagcagtgctcacccctgaagatgatcgtgcattacgtgct
gcattggcctctagcttatttgcattaacagccgttgaacttgatcaactcaacaacagt
gagaatgcatgggaagcggcaattaataacttcaaagagtaccgaaaacaatggttaaca
cgtggcgtaatggcaatgatacgtagcgtgatggcaaaagaaaaaatggctgaaaactta
ttagcagaagaaggcggcgagcgccgtttaaccgatttactgcatattgctgagttactg
caagaagcgagtcaaaccttagacagtgattacggtttattacgttggttagccgagcat
gtagcagagccaaacggtaatgctgaagatcaggttttacgcttggaatcagaacgtaac
ttggtgcaaattgtcacgattcacaaatcgaaggggctagagtatgacctcgtctttatg
ccgtttgtgtgtagttatcgtgaggttgatagtaaaggtgaagtgaaataccacgatgaa
gcagaaaacatcacagtattagatatagccaagcaagcggattcgattgaaaaagccgat
aaagagcgcctagcagaagatcttcgtcttatttacgttgccctaacgcgtgccgtgtat
ggttgttatatcggtatggctccgattcgtaatggtcggagtaccaaagaaccgaccgga
ttacatcactcagcaatggggcatttaattcaaaatggcaaagaaggcaccattgccgat
ttggaattagccttagcgaaattagcagaaagccaaccggcgattactattgtcgagcca
cctgttttacctgaagaaaagtggcagccgctagatcaagaagatgcagagctatcgcct
aatcagtttacgatgtcgcttgagcgtaattggtggatgaccagttattccagcctagtg
aaacaaggacaccaagcctaccatgacagcagcttagatctgccaggatttgatattgaa
tcagcagctgaaacggcgattgatggcgaagccagcgttgatcatgacggtaatctggtt
gaacttgagcctgaatattcaatttatacttttccgcgaggtgcgcgccccggtacattt
ttgcataccgtttttgaagagattgaatttacagcgcccgtcgatagccctgaaaccgtg
gcaaccttgaccgatttgttgcaaaaagaaaattatgatctggtgtggttaccagtatta
caacaattgattaaagatgtactgaactgttcactagacgggcagggcatgaaattggtc
gataagaacccgtcacaacgactaacggaaatggagtttctactgccaatcaccttattg
tcatcgagaatgttgaataaggtaatagcaaagcatgacacggtatcagccaaggcgggt
gaactgggctttgcgacggtcagtggcatgctgaaaggctttatcgatttagtgtttgag
catgatggcaaatactatgtactcgattggaaatcgaaccatttaggggatgaccctagt
gtgtatcgtggcgcacagctggtcgaagccatgcgtgatcaccgttatgatttgcaatac
caaatctatgcccttgcattacagcgctttctgcgcagccgcatgccgaattatgattac
gaaacccactttggtggtgtgttttacttgtttttacgtggcatggaagcaggcagtgac
agtggcattttccatgcgcggccaagtgaagccttactgctggaactagaacaattaatt
gatggagagcagatcgatgcttaa
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integrated database retrieval system
