Pseudomonas protegens Cab57: PPC_3224
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Entry
PPC_3224 CDS
T03613
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PPC_3224
09124 Replication and repair
03420 Nucleotide excision repair
PPC_3224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_3224
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_3224
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PPC_3224
Transcription machinery [BR:
ppro03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PPC_3224
DNA repair and recombination proteins [BR:
ppro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PPC_3224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
BAO62571
LinkDB
All DBs
Position
complement(3578815..3581091)
Genome browser
AA seq
758 aa
AA seq
DB search
MSYRIAVRALCEFSAKAGDLDLRFTPSPTALEGIAGHRTVASRRNPGYQSEVALEGQYAE
LQVKGRADGYDPAQNLLEEIKTYRGDLERMPDNHRQLHWAQAKVYGWLLCQRLQLPSIRV
SLVYFDVLSEGETALVQEHSAEALEEFFNRQCALFLHWAQQQMHHRATRDQATRDLRFPH
AEFRRGQRPLAESVYKAVSTGRCLLAQAPTGIGKTLGTIFPMLKAMAAQQLDTLLFLTAK
TPGRQLALDAARVLFSGVPGLALRVLELVARDKACEHLDKACHGESCPLAKGFYDRLPAA
RQAASQVPLLDRQALREVALEHQVCPYYLSQEMARWSDLVVADYNYYFDFSALLFGLAQA
NQWQVAVLVDEAHNLVERGRGMYSASLDQQQLASVRSSAPQALKSPLQRLNREWNALHKE
QVAEYQAYAQLPAALLKALALCVAALGDYFNEQPRGLDSGLQGLYFELLQFARVAELFDE
QQFIFDISKRALGAKRSLSRLSLRNVVPAALLGPRLAAARSTVLFSATLTPRGYYADLLG
LPDNTVWLDVESPFDAGQLEVQIISRISTRYAHRQASLAPIVELMARQFAARPGNYLAFF
SSFDYLQQVAGLLAREHPDIVLWCQSRGMDEASRQDFLQQFRPEGQGIGFAVLGGAFGEG
IDLPGSKLIGAFVATLGLPQLNPLNEQMKQRMAALFGSGYDYTYLYPGLQKVVQAAGRVI
RGQSDRGVLMLIDDRFAEPRVRQLLPSWWALDAPPAGG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgagttatcgcatcgcggtgcgcgccctgtgcgaattcagcgccaaggccggcgatctg
gacctgcgcttcaccccatcgcccactgcgctggagggcattgccgggcaccgtaccgtg
gcttcgcgacgcaaccccggctaccagagtgaagtggccctggaggggcaatacgccgag
ctgcaggtcaagggcagggcggacggctacgacccggcgcagaacctgctggaggagatc
aagacctaccgtggcgaccttgagcgcatgcccgacaaccatcggcaattgcactgggcc
caggccaaggtctatggctggctgctgtgccagcgcctgcaactgccgagcatccgtgtc
tcgctggtgtatttcgatgtgctcagcgaaggcgaaaccgcgctggtgcaagagcacagc
gccgaggcgctggaagagttcttcaatcgccagtgcgcgctgttcctgcactgggcgcaa
cagcaaatgcaccatcgcgcgacccgggaccaggccacccgggacctgcgctttccccac
gccgagtttcgtcgcggtcagcgcccgctcgccgagtcggtgtacaaggcggtgagcacc
gggcgctgcctgctggcccaggcccccaccggcatcggcaagaccctgggcacgatcttt
cccatgctcaaggccatggctgcgcagcagttggacacactgctgtttctcaccgccaag
accccgggccggcaactggccctggatgccgcccgggtgctgttctccggggtgccgggg
ctggcgttgcgggtgctggagctggtggcccgggacaaggcctgcgaacacctggacaag
gcctgtcacggtgagtcctgccccttggccaagggcttttacgaccgcctgccggcggca
cgccaggccgccagccaggtgccattgctggatcgtcaggcgctgcgcgaggtggccctg
gagcatcaggtctgcccctactacctgagccaggaaatggctcgctggagtgacctggtg
gtggccgactacaactactacttcgacttcagcgccttgctcttcggcctggcccaggcc
aaccagtggcaggtggcagtgctggtggacgaggcccacaacctggtggagcgcgggcgt
ggcatgtacagcgcgagcctggaccagcagcaattggcgagcgtgcgcagcagcgcgccc
caggccttgaagagcccgttgcagcggctcaatcgcgagtggaatgccttgcacaaggag
caggtggccgagtatcaggcctatgcccagctacctgccgcgctgctcaaggccctggcc
ctgtgcgtagcggccctgggggactatttcaacgaacagccccggggcctggacagcggt
ttgcagggcctgtatttcgaactgctgcagtttgcccgagtggcggagctgttcgatgag
cagcagttcatcttcgacatcagcaagcgcgccctgggcgccaagcgcagcctgtcgcgc
ctgagcctgcgcaatgtggtgccggcggcgctgctggggccacgcttggcggcggcccgc
agtacggtgctgttctccgccaccctcactccccgaggttactacgctgacctgctgggg
ctgccggacaacaccgtgtggctggatgtggaatcgccgttcgacgccgggcagctggag
gtgcagattatcagccgcatttctacccgctatgcccaccggcaggcttccctggcgccg
attgtcgagctgatggcccggcagttcgcggcgcgcccgggcaactacctggcgttcttc
agtagcttcgactacctgcaacaggtggctgggttactggcgcgcgagcacccggacatt
gtgctctggtgccagtcccgaggcatggacgaggcttcgcgccaggactttctccagcag
tttcgtccagaggggcagggtatcggttttgccgtactcggcggtgctttcggcgagggc
atcgacctgccggggtcgaaactcatcggggcctttgtcgcgaccctcggcttgccccaa
ctcaacccgctgaacgagcagatgaagcagcgcatggcggcgctgttcggctccggctat
gactacacctacctgtacccgggcctgcagaaagtggtgcaggcggcagggcgggtgatc
cgtggccagtccgaccgtggggtgctgatgctgatcgatgatcgctttgccgaacccagg
gtccgccagctgctgccgagctggtgggccctggacgcgccgccggctggcggctag
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