Pseudomonas protegens Cab57: PPC_3439
Help
Entry
PPC_3439 CDS
T03613
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppro03032
]
PPC_3439
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_3439
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPC_3439
DNA replication proteins [BR:
ppro03032
]
Prokaryotic type
DNA Topoisomerases
PPC_3439
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPC_3439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BAO62786
LinkDB
All DBs
Position
3830945..3831982
Genome browser
AA seq
345 aa
AA seq
DB search
MPDACDTPALPADLHYTDDRQPGIQRRKLRGKFVYYDAQGQRLTQAAEVQRINALAIPPA
YAEVWICPDPKGHLQATGRDARGRKQYRYHPRWREVRDGDKYARLLAFGNALPKLRRQLQ
AQLAVPGFSREKVMATLILLLDETLIRVGNSQYARDNRSYGLTTLRNRHVQVSGSAIHFQ
FRGKSGVEHQITVKDPRLARVVKRCLELPGQQLFQYLDEDGQRHHVSSSDINACLQQLTG
TDFTAKDYRTWAGSVLALERLRQQPWEPQAEAKKHIVATVKEVARELGNTPAVCRKCYIH
PALLERFVLGELAQLPKARARQGLKAEEAGLANFLRRLAKEAQPA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgcttgcgatacccccgccctgcccgccgacctgcactacaccgacgaccgc
cagccgggcatccagcggcgcaagctgcggggcaagttcgtctactacgacgcccagggc
cagcgccttacccaggccgccgaggtacagcggatcaacgccctggcgattcccccggcc
tacgcagaggtgtggatctgccccgaccccaaaggccatctgcaggccaccggccgcgac
gcaaggggccgcaagcagtaccgctaccacccgcgttggcgtgaagtgcgcgacggtgac
aagtacgctcgcctgctggcgttcggcaacgccttgcccaagctgcgccggcagttgcag
gcgcaattggcggtgcccggcttcagccgggaaaaggtcatggccaccttgatcctgctg
ctggatgaaaccctgatccgcgtcggcaacagccagtatgcccgggacaatcgctcctac
ggcctgaccacgttgcgcaaccgccatgtacaggtcagcggcagcgccatccacttccag
ttccgtggcaagagcggggtcgagcaccagatcaccgtcaaggacccgcgcctggcacgg
gtggtcaagcgctgcctggagttgcctgggcagcagctgttccagtacctggacgaagac
ggtcaacggcaccacgtcagctcatcggacatcaacgcctgcctgcagcaactgaccgga
accgacttcaccgccaaggactaccgcacctgggccggcagcgtcctggccctggagcgg
ttgcgccagcagccttgggagccccaggccgaggcgaagaaacacatagtggcaacggtc
aaggaagtggcccgggaactgggtaacactccggcggtgtgccgcaagtgctacatccat
ccggcgctgctggagcgcttcgtcctcggtgagttggcgcagttgcccaaggcccgcgcc
cgccagggcctgaaggccgaggaagcgggcctggcgaactttctgcggcgcctcgcgaag
gaggcccaaccggcctga
DBGET
integrated database retrieval system