KEGG   Pseudomonas protegens Cab57: PPC_3439
Entry
PPC_3439          CDS       T03613                                 
Name
(GenBank) DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ppro  Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:ppro00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppro03032]
    PPC_3439
   03400 DNA repair and recombination proteins [BR:ppro03400]
    PPC_3439
Enzymes [BR:ppro01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PPC_3439
DNA replication proteins [BR:ppro03032]
 Prokaryotic type
  DNA Topoisomerases
   PPC_3439
DNA repair and recombination proteins [BR:ppro03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PPC_3439
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact
Other DBs
NCBI-ProteinID: BAO62786
LinkDB
Position
3830945..3831982
AA seq 345 aa
MPDACDTPALPADLHYTDDRQPGIQRRKLRGKFVYYDAQGQRLTQAAEVQRINALAIPPA
YAEVWICPDPKGHLQATGRDARGRKQYRYHPRWREVRDGDKYARLLAFGNALPKLRRQLQ
AQLAVPGFSREKVMATLILLLDETLIRVGNSQYARDNRSYGLTTLRNRHVQVSGSAIHFQ
FRGKSGVEHQITVKDPRLARVVKRCLELPGQQLFQYLDEDGQRHHVSSSDINACLQQLTG
TDFTAKDYRTWAGSVLALERLRQQPWEPQAEAKKHIVATVKEVARELGNTPAVCRKCYIH
PALLERFVLGELAQLPKARARQGLKAEEAGLANFLRRLAKEAQPA
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcccgacgcttgcgatacccccgccctgcccgccgacctgcactacaccgacgaccgc
cagccgggcatccagcggcgcaagctgcggggcaagttcgtctactacgacgcccagggc
cagcgccttacccaggccgccgaggtacagcggatcaacgccctggcgattcccccggcc
tacgcagaggtgtggatctgccccgaccccaaaggccatctgcaggccaccggccgcgac
gcaaggggccgcaagcagtaccgctaccacccgcgttggcgtgaagtgcgcgacggtgac
aagtacgctcgcctgctggcgttcggcaacgccttgcccaagctgcgccggcagttgcag
gcgcaattggcggtgcccggcttcagccgggaaaaggtcatggccaccttgatcctgctg
ctggatgaaaccctgatccgcgtcggcaacagccagtatgcccgggacaatcgctcctac
ggcctgaccacgttgcgcaaccgccatgtacaggtcagcggcagcgccatccacttccag
ttccgtggcaagagcggggtcgagcaccagatcaccgtcaaggacccgcgcctggcacgg
gtggtcaagcgctgcctggagttgcctgggcagcagctgttccagtacctggacgaagac
ggtcaacggcaccacgtcagctcatcggacatcaacgcctgcctgcagcaactgaccgga
accgacttcaccgccaaggactaccgcacctgggccggcagcgtcctggccctggagcgg
ttgcgccagcagccttgggagccccaggccgaggcgaagaaacacatagtggcaacggtc
aaggaagtggcccgggaactgggtaacactccggcggtgtgccgcaagtgctacatccat
ccggcgctgctggagcgcttcgtcctcggtgagttggcgcagttgcccaaggcccgcgcc
cgccagggcctgaaggccgaggaagcgggcctggcgaactttctgcggcgcctcgcgaag
gaggcccaaccggcctga

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