Paroceanicella profunda: FDP22_02580
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Entry
FDP22_02580 CDS
T06319
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03420
Nucleotide excision repair
ppru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FDP22_02580
03430 Mismatch repair
FDP22_02580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_02580
Enzymes [BR:
ppru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FDP22_02580
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FDP22_02580
MMR (mismatch excision repair)
Other MMR factors
FDP22_02580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QDL90772
UniProt:
A0A5B8FWK1
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All DBs
Position
575644..578103
Genome browser
AA seq
819 aa
AA seq
DB search
MSEWDETDDFTAWEAQSLSAQAMAARPAPYLDTLNAPQRAAVEQLDGPVLVLAGAGTGKT
RALTARIAHLLNTGRARPHEILAVTFTNKAAREMKSRIGALVGGVIEGMPWLGTFHSLCV
RILRAHAELVGLKSNFTILDSDDQLRLMKQIIQAEGIDDKRWPSRLLASLIDRWKNRAWT
PDKVPADESGQYDGRGAELYAAYQARLKTLNAADFGDLLLHVVQIFLMHPDVLAKYQRWF
RYILVDEYQDTNVAQYLWLRLLAQGHRNICCVGDDDQSIYGWRGAEVGNILKFEKDFPGA
AVIRLEQNYRSTPHILAAASSVIHQNESRLGKTLWTDSPEGEKVRLIGHWDGEEEARWIG
EEIEALTRGTRGHAPVSADGIAILVRASFQMRAFEDRFLTIGLPYRVIGGPRFYERAEIR
DAMAYFRVVVSPDDGLAFERIVNTPKRGIGDKAQQEINRIARENGVSLLEGARMLVEAGG
LSAKARKALGELVAGFDRWRAWNRALGAGTVADGEVLVSDDRPETDGPLTHVELAQIILD
ESGYTEMWRTDKSPEAPGRLENIKELVQALEEFENLQGFLEHVALVMDNEQDESAPKVSI
MTLHGAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEEHLTISF
AANRHVYGRWQSALPSRFIDELPKSHVDVLTPPGLYGGSFGASSPGGGFTEAAGLPGVMR
GTDLEQRAAQANVYNSPGWARMQARRGQHGTSQPRESRNLVIDAKAVSARKIGERVFHQK
FGYGEVMEIEGDKLTIEFDKAGTKRVVGSFVTAADEAPF
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatgggacgaaaccgacgatttcaccgcctgggaggcacagagcctcagcgcg
caggccatggccgcgcgcccggcgccctatctggacacgctgaacgcgccgcaacgcgcc
gcggtggagcagctggacggccccgtgctggtgctcgccggcgcgggcacgggcaagacc
cgggcgctcaccgcacgcatcgcgcacctgctcaacaccggccgcgcccgcccgcacgag
attctcgccgtcaccttcaccaacaaggccgcgcgcgagatgaagtcccgcatcggcgcg
ctggtgggcggggtgatcgagggcatgccctggctgggcaccttccactcgctgtgcgtg
cgcatcctgcgcgcccacgcggaactggtggggctgaaatccaacttcaccattctggat
tcggatgaccagctgcgcctgatgaagcagatcatccaggccgagggcatcgacgacaag
cgctggccgtcgcggctgctggcctcgctgatcgaccgctggaagaaccgcgcctggacc
ccggacaaggtgccggccgacgaatccgggcaatatgacggccgcggggcggagctttac
gccgcctaccaggcccggctgaagaccctcaacgcggcggatttcggcgacctgctgctg
catgtcgtgcagatcttcctcatgcacccggacgtgctggcgaaataccagcgctggttc
cgctacatcctggtggacgagtatcaggacaccaacgtcgcccagtacctgtggctgcgc
ctgctcgcgcagggccaccgcaacatctgctgcgtgggcgacgacgaccagtccatctac
ggctggcgcggcgcggaagtgggcaacatcctgaagttcgagaaggatttccccggcgcg
gcagtcatccggctggagcagaactaccgctccaccccgcatatcctcgccgcggcctcc
tcggtcatccaccagaacgagagccggctgggcaagaccctctggaccgattcgcccgag
ggcgagaaggtccggctcatcggccattgggacggcgaggaggaagcccgctggatcggc
gaggagatcgaggcgctcacccgcggcacccggggccacgccccggtgtcggccgacggc
atcgccatcctggtgcgcgcctccttccagatgcgcgccttcgaggaccggttcctgacc
atcggcctgccctaccgcgtcatcggcggcccgcgcttctacgagcgcgccgagatccgt
gacgcgatggcctatttccgcgtcgtcgtctcgcccgatgacgggctcgccttcgagcgc
atcgtgaacacgcccaagcgcggcatcggcgacaaggcccagcaggagatcaaccgcatc
gcgcgcgaaaacggcgtctcgctgctggagggcgcgcggatgctggtggaggccggcggc
ctctccgcgaaggcgcgcaaggcgctcggcgaactggtcgcgggcttcgaccgctggcgc
gcctggaaccgcgcgctcggcgccggcacggtggcggacggcgaggtgctggtgagcgac
gaccggccggagaccgacggccccctcacccatgtcgaactggcgcagatcatcctcgac
gagagcggctacaccgagatgtggcgcaccgacaagtcgccggaggcgccgggccggctg
gagaacatcaaggagctggtgcaggcgctggaggagttcgagaacctgcagggcttcctc
gagcacgtcgccctcgtgatggacaacgagcaggacgagagcgccccaaaggtgtcgatc
atgaccctgcacggcgcgaaggggctggaatttccggccgtgttcctgccgggctgggag
gacgggctcttcccctcgcagcgctcgatggacgagagcgggctgaaggggctggaggag
gagcgccgcctcgcctacgtgggcatcacccgggcggaggagcatctcaccatctccttc
gcggcgaaccggcatgtctacgggcgctggcaatccgcgctgccgtcacgctttatcgac
gagttgccgaagtcccatgtcgacgtgctgacgccgccgggcctctacggcggcagcttc
ggcgcctcgtcgccgggcggcggctttaccgaggcggccggccttcccggcgtgatgcgc
ggcaccgacctggagcagcgcgcggcgcaggcgaatgtctacaattcgccgggctgggcg
cggatgcaggcccggcgcggccagcacggcaccagccagccgcgcgagtcgcgcaacctg
gtgatcgacgcgaaggcggtgagcgcgcgcaagatcggcgagcgcgtgttccaccagaaa
ttcggctatggcgaggtgatggagatcgagggcgacaagctcaccatcgagttcgacaag
gccggaaccaagcgtgtcgtgggaagcttcgtgaccgcggcggacgaagcgccgttctga
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