Paroceanicella profunda: FDP22_02725
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Entry
FDP22_02725 CDS
T06319
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppru03016
]
FDP22_02725
Enzymes [BR:
ppru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FDP22_02725
Transfer RNA biogenesis [BR:
ppru03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FDP22_02725
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QDL90796
UniProt:
A0A5B8FQB3
LinkDB
All DBs
Position
610856..611467
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AA seq
203 aa
AA seq
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MSVTLYQGDVPDELDLGPVVAIDTETMGLVPGRDRLCVVQLSSGDGNAHVVQVAPGQTEA
PNLSRMLANPEQLKLFHYGRFDIAMLERAFGVRAAPVYCTKIASKLVRTYTDRHGLKNLT
HELIGVDISKAQQSSDWGAPELTQAQLDYAASDVLYLHRLRDVLDIRLAREGRTGLARAA
FDFLPFRAALDLAGWPETDIFAH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttactctctaccagggtgacgtgccggacgaactggaccttggtccggtcgtg
gcgatcgatacagagaccatggggcttgtccccggccgcgaccggctttgcgtggtgcag
ctctcctccggagacggcaacgcgcatgtggtgcaggtcgcgccgggccagaccgaggcc
ccgaacctttcccgaatgctcgcgaatcccgaacagctaaagctgttccattacggccgc
ttcgacattgccatgctcgagcgcgccttcggcgtgcgggcggcgccggtctactgcacg
aagatcgcctcgaagctggttcgcacctatactgaccgtcacggactgaagaatctcacc
catgagctgatcggggtggacatctccaaggcccagcagtcgagcgactggggcgccccg
gagctgacgcaagcacagctcgactatgccgcgtcggacgtgctctacctgcaccgcctg
cgcgacgtcctcgacatccggctggcacgcgaaggccggaccgggctggcccgggccgcg
ttcgacttcctgcccttccgggcggcgctcgacctcgcgggctggcccgagaccgacatc
ttcgcgcattga
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