KEGG   Paenibacillus psychroresistens: EHS13_00935
Entry
EHS13_00935       CDS       T06328                                 

Gene name
ligA
Definition
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ppsc  Paenibacillus psychroresistens
Pathway
ppsc03030  DNA replication
ppsc03410  Base excision repair
ppsc03420  Nucleotide excision repair
ppsc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EHS13_00935 (ligA)
   03410 Base excision repair
    EHS13_00935 (ligA)
   03420 Nucleotide excision repair
    EHS13_00935 (ligA)
   03430 Mismatch repair
    EHS13_00935 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppsc03032]
    EHS13_00935 (ligA)
   03400 DNA repair and recombination proteins [BR:ppsc03400]
    EHS13_00935 (ligA)
Enzymes [BR:ppsc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EHS13_00935 (ligA)
DNA replication proteins [BR:ppsc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EHS13_00935 (ligA)
DNA repair and recombination proteins [BR:ppsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EHS13_00935 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EHS13_00935 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EHS13_00935 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EHS13_00935 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH DNA_ligase_ZBD DUF669
Other DBs
NCBI-ProteinID: QGQ93584
UniProt: A0A6B8RCQ6
LinkDB
Position
202017..204053
AA seq 678 aa
MGEIQASEQQLEQMKQLIAEINHHNKLYYTLDQPELTDKQYDLLYDSLTNLEKETGITLP
FSPSLRIGDALLNGFESYKHRAKLWSLDKAQNITDLQTWHTRAIKLWEQYNAAHPDDLLP
PLSFAVELKFDGLSLNLTYEHGDLVQAATRGNGVIGESILAQVKTIRSIPLQIPYTDGVI
EVQGEGMMFLSVMEQYNKTAVEPLKNARNAAAGALRNLNPLNTAERKLNAFMYNVGYSDH
LQFNNHQEMAAFLRENGFKINPYLQYFETMEEVADELERMAEKRLTLDYLIDGGVVKITD
MRTREVFGYTDKFPRWAVAFKFEAEEAETTLLSVTWEVGRTGKLTPNATVEAVDFGGVTV
QRCTLNNRGDIERKNLQHALGSLVIIRRSNDVIPEILGKANDEQDGEEIIYPVNCPACAT
LLEERGAHIFCPNRLDCPPQLIGRITHFASRDAMDIDTFSIATAEQLYHEREVKDPADLY
ELTYEQLVGLERFGEKKAKKLLGAFEKSKKPDLSAFLYALGISNTGKTTTKVLADHFGNL
QAILAASAEELITLPDVGGIVAESIVAFFADPRMRLSIERMLASGVEPSTSVRAVVTDEG
SIFYGKTVVLTGSLPNLSRDEAGKMLEAVGAKISGSVSKKTDFVVAGESAGSKLTKAQEL
GIRIIDSEEELLQLLNGN
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgggagaaatacaagcgtccgagcagcagctagagcagatgaaacagctcattgctgaa
attaatcatcataacaagctgtactatacgttggatcagccagaactaacagataagcag
tatgatcttttatatgattcgttgactaacttagaaaaagaaacagggattactctgccc
ttttctccttcactgagaattggagacgcactgttaaatggatttgaatcttataaacac
cgcgctaagctttggagcttggataaagcccagaatataaccgatctccagacctggcat
acacgtgctataaagctttgggagcagtataatgcggcccatccagatgatttactgcct
ccgctatcatttgcagttgagctgaaatttgatggactgtctctgaatttgacctatgag
catggagatttagtgcaagcggctacccgtggcaatggagttattggagaaagtatcctt
gctcaagtgaagaccattcgttccattccactgcaaattccttatacagatggggttatt
gaagtgcagggcgaaggaatgatgttcttatctgtgatggagcaatataacaaaaccgcg
gtagaaccattgaagaatgcacgtaatgctgccgctggcgcactgcgtaatttgaacccg
ctaaacacggccgagcgcaagctgaatgcttttatgtataacgtcggctatagcgaccac
ttacaatttaacaaccatcaggagatggctgctttcttacgtgagaatggctttaaaata
aatccctacctccaatatttcgaaacaatggaagaagtagcggatgagctggagcgaatg
gcagaaaaaagactaacccttgattatttaatcgatggtggtgtcgtgaaaattacggat
atgcggacccgtgaggtttttggctatacggataaattcccacgttgggcggttgctttt
aaatttgaagccgaagaagcggaaacgaccttgctttctgtcacatgggaagtgggccga
accggcaagctaacccctaacgcaactgtggaagccgttgactttggtggtgtaaccgta
cagaggtgtacgttgaataatcgcggtgatatagaacgcaagaatttacagcatgccttg
ggcagtctggtgattattcgccgttccaatgatgtcattccagagattttaggcaaggct
aatgatgagcaggatggagaagaaataatctatcccgtaaactgtccggcttgcgctact
ttgctggaagaacgcggagctcatatcttttgtcccaaccgtttagactgccctccccaa
ttaattggccggatcacgcattttgcttcacgggatgctatggatatagataccttcagc
attgctacagcagagcagctttaccatgagcgtgaggtcaaagatcccgcagatttatat
gagcttacttatgagcaattggttgggttggaacgtttcggtgaaaagaaagccaagaag
ctgctgggggcatttgagaaaagtaaaaagccggatctatccgcatttctatatgcatta
ggtatttcaaacacagggaaaaccaccactaaagtattagccgatcattttggaaattta
caagctattttagctgcaagtgcggaagagctgattaccttacccgatgttggcgggatt
gttgccgagagcattgttgccttttttgctgatcctcgtatgcgtctcagtattgagcgt
atgctggccagcggagtggaaccatcgacgtctgtgcgtgctgttgttacggacgaggga
agtattttttatggtaagacagtagttcttacaggatcattgccaaacttaagtcgcgat
gaagcgggtaaaatgctagaagcggtcggagcgaagatatcaggcagtgtttctaagaag
actgactttgtcgttgcaggtgaaagcgcgggaagtaaattgacgaaagcacaagagctg
ggcattcgtattattgatagcgaggaagaattactgcagcttttgaatggaaattga

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