KEGG   Paenibacillus psychroresistens: EHS13_01090
Entry
EHS13_01090       CDS       T06328                                 

Gene name
rpoB
Definition
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ppsc  Paenibacillus psychroresistens
Pathway
ppsc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppsc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHS13_01090 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsc03021]
    EHS13_01090 (rpoB)
   03400 DNA repair and recombination proteins [BR:ppsc03400]
    EHS13_01090 (rpoB)
Enzymes [BR:ppsc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EHS13_01090 (rpoB)
Transcription machinery [BR:ppsc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EHS13_01090 (rpoB)
DNA repair and recombination proteins [BR:ppsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EHS13_01090 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: QGQ93609
UniProt: A0A6B8RAG6
LinkDB
Position
231836..235369
AA seq 1177 aa
MAGHIVQFGRRKRRSYARIREVLDIPNLIEIQQKSYEWFLEEGLREMFQDISPIQDFTGN
LVLEFIDYSLGDPKYTVDDSKERDVTYAAPLRVKVRLFNKETGEVKEQEVFMGDFPIMTD
TGTFIINGAERVIVSQLVRSPSVYFSTKIDKNGKKNYTATVIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEIIDLLGDDEYIRNTLDKDNTDSTDKALIEIYERLR
PGEPPTLDNARSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLFDPETGE
IIAEAGQSLDRRLLDEILPHLEKGVGFKQYIVHGGVTETDKIPMQAIDVYSPIEEGKVIK
VIANGTIDKGVKNITPADIISSINYFINLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTGVVTEKISYVTADEEDNYIVAQANAELGEDNRFANETVIVRFRGDNLY
VPRDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPRSPLVGTGM
EHKAAKDSGVCVVSKCDGVVERVSANEITVRRQELVDGKLVSGNLVKYKLHKFIRSNQGT
CINQRPLVYRGEVVKTGDILADGPSTEQGELALGRNVVVAFMAWEGYNYEDAILLSEKLV
KEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEIGAGDIL
VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGDELP
PGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTAVEVVLNPLGV
PSRMNIGQVLEVHLGFAAKLLGIHTATPVFDGARENDVFDTMEEAGMQRSGKTKLYDGRS
GEEFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGMDV
KILSATEEEIEMRDLDDDEIANDKLNLNLEGAELGME
NT seq 3534 nt   +upstreamnt  +downstreamnt
ttggcgggacatattgttcaattcggacgacgtaaacgcaggagttatgcacggattcgt
gaagtgctggatattcctaacctgatcgaaattcaacaaaaatcatatgaatggtttttg
gaagaaggattgcgcgaaatgttccaggatatttctccgattcaagacttcacagggaat
ttagttttagaattcattgattatagcttgggcgatcccaagtatacggtggatgactcc
aaagaacgtgacgttacttatgctgcgccattgcgagtcaaagtacgtttatttaataaa
gaaaccggtgaagtgaaagagcaagaagttttcatgggtgatttccctattatgaccgat
acaggcacattcattattaatggtgcagaacgtgttatcgttagtcagctagttcgttct
cctagcgtttattttagcacaaaaatcgataaaaatggtaagaaaaattacacagcaaca
gtcatccctaatcggggtgcttggcttgaattggaaacagatgcgaaggacattatttat
gttcgtattgatcgtacgcgtaagattcctgtcactgttttattgcgcgcattgggcttt
ggaacagatgctgaaattatcgatttgcttggtgatgatgagtatattcgtaatacgctt
gataaagataacacggattcgacagacaaagcattgattgaaatctatgaaagattgcgt
ccaggtgagccgccaacattagacaatgcaagaagtctacttgttgcacgcttttttgac
cctaaacgttatgatcttgccaatgttggtcgttacaaaatcaacaaaaaactgcatatt
aaaaaccgtttgtttaatcagagattagcagaaactttgttcgatcccgaaacaggtgaa
attattgcagaagcaggacaatccttggatcgtcgtcttttggatgaaattttgcctcac
ttggaaaaaggtgtgggctttaagcaatatatcgtacatggtggcgtaacggaaacggat
aaaatccctatgcaagccattgatgtatattcaccaattgaagaaggtaaagtaattaag
gttattgcaaatggaacgattgataaaggcgtgaagaatatcacacctgcagatatcatt
tcatcgattaattatttcattaatctattgcatggtattggatctacggatgatattgat
cacttaggtaatcgacgtcttcgttcagttggggagcttctacagaatcaattccgtatc
ggtttatcccgtatggaacgggttgttcgtgagcgtatgtcgattcaagatgctaatgtt
atcactccacaggccttgattaatatacgtccagttattgcttcaattaaagagttcttc
ggaagctcacaattgtctcaatttatggatcagacgaatcctttggctgagctgacgcat
aagcgtcgtctatctgccctagggcccggtggtttgacgcgtgaacgcgcagggtttgaa
gtgcgtgacgttcattactctcactatggtcgtatgtgtccaattgaaactcccgaaggt
ccgaacattgggttgattaactccttgtccacttttgctcgtatcaatgaatatggtttt
attgaagcaccttaccgttgggttgatcctaaaacaggagttgtaactgagaaaatttct
tatgtaacagctgacgaagaagacaactatattgttgctcaagcaaatgcagagctaggc
gaggataatagatttgcgaatgaaaccgtcattgttcgtttccgaggggataatctttat
gtaccgcgggatcgtgtcgattatatggatgtttcacctaagcaagttgtatctgtagca
acagcgctgattcctttccttgagaatgatgactccaaccgtgctctaatgggatcaaac
atgcagcgtcaagccgtacctttacttattccgcgttcccctttagttgggacagggatg
gagcataaggctgctaaggattcaggcgtgtgtgttgtttctaaatgtgatggtgttgtt
gaaagagtttcggctaatgaaattacggttcgtcgtcaagaattagtggatggcaagcta
gttagcggaaatcttgttaaatataaattgcataagtttatccgttcaaatcaaggcaca
tgtatcaaccaacgtcctctcgtctatcgtggagaagtcgttaaaacgggagatatcttg
gctgatggaccttcaacggagcaaggtgaattagcattagggcgtaacgttgtcgtggcc
ttcatggcatgggaaggctacaactatgaggatgcgattcttctaagcgaaaagttagtt
aaagaggatgtttatacctctatccatattgaagagtatgagtccgaagcccgtgatacg
aagcttggacctgaagaaatcacacgtgatatcccgaatgtcggcgaagatgcattacgc
aacttagacgaacgcggaattatccgggtcggtgctgagattggtgcaggcgatattcta
gttggtaaagtaacccctaagggagttaccgaattaacagcagaagaacgcttattgcat
gcgatttttggtgaaaaagcaagagaagttagagacacttcacttcgcgtgccgcatggt
accgatggaattgttgtggacgttaaggtctttacccgtgagaatggggatgagcttcca
ccgggtgttaatcaactcgtacgtgtttatattgcccaaaagcggaaaatatccgaaggg
gataaaatggcaggacgtcatggtaataaaggggttattgcccgaatcttacctgaggaa
gatatgccgttcctaccggatggtactgcagttgaagttgtcttgaatccactaggtgtt
ccttctcgtatgaacattggtcaagtacttgaagtgcatctaggctttgctgctaaattg
ttaggtattcataccgctactcctgtatttgatggagctcgtgagaatgacgtatttgac
actatggaagaagccggtatgcaacgtagtggtaagaccaagctttatgatggtcgcagt
ggtgaagagtttgaacgtgaagttacggttggggtcatgtatatgatcaagctggcacat
atggtcgacgataaaatccatgcacgttccacaggtccttactctcttgttacacaacaa
ccattgggcggtaaagctcaatttggtggtcaacgtttcggggaaatggaagtttgggca
ttggaagcttacggcgcagcctatacactgcaagaaattttgaccgtaaaatcggatgat
gttgtaggtcgcgtcaaaacgtacgaatcgattgttaaaggcgagaacgttcctgaacca
ggtgtgcctgaatcgtttaaggttctaataaaagaactacaaagcttgggaatggacgta
aaaatcttgtctgcaaccgaggaagaaatcgagatgcgtgatctagatgatgatgaaata
gccaatgacaagctgaacttgaatttagagggcgcagaattgggtatggagtaa

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