KEGG   Paenibacillus psychroresistens: EHS13_01095
Entry
EHS13_01095       CDS       T06328                                 

Gene name
rpoC
Definition
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ppsc  Paenibacillus psychroresistens
Pathway
ppsc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppsc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHS13_01095 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsc03021]
    EHS13_01095 (rpoC)
   03400 DNA repair and recombination proteins [BR:ppsc03400]
    EHS13_01095 (rpoC)
Enzymes [BR:ppsc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EHS13_01095 (rpoC)
Transcription machinery [BR:ppsc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EHS13_01095 (rpoC)
DNA repair and recombination proteins [BR:ppsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EHS13_01095 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: QGQ93610
UniProt: A0A6B8RBH1
LinkDB
Position
235413..239057
AA seq 1214 aa
MIDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFSAGMGAEAVKKLLQ
DIDITKDLEHLKEELKTAQGQRRNRAIKRLEVIEAFRNSKNAPEWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGCFYLTMADKTSKGSYLILASVKEAFSLYQRGSASLHAVVAIQ
AKVLNKTSFNEKQQNAILLTTIGKIIFNDIFPADFPYINESTKTNLLNGTPEEYFVYEKG
ANIKERIDAFTEKLAVGKEYLGSIIAECFRRYQTTLTSTILDNIKGLGFTYSTKSGITIA
VSDVTVPLEKDKIIKDSDEKVRIVTNQFRRGLITDEERYDRVISIWSDAKEEITTILMNS
LQKFNSINMMVESKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVTKIQDGKEVIEDL
YDRIEGRYAFETIKHPETGEVLVTRNELIEASIADSIINAGIEKMQIRSVLSCRARWGVC
KKCYGRNLATGQHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISEVDGVIKEIREAKDRREIEVQGEAEAKIYAVTYGSRIRVTKGQQVEA
GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIRQMLRKIRI
VDAGNTTLLPGAFVDIHEYEAANKTALYAGEEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMARYRNIRLTNPNEIALANSALTD
ETIENDGEVVVSAK
NT seq 3645 nt   +upstreamnt  +downstreamnt
ttgatcgacgtgaacaattttgaatatatgaaaattggtttggcttcgccagaaaagatc
cgctcgtggtcgcgcggcgaagtgaagaaaccagaaaccattaactacagaacattaaag
ccggaaaaagaaggcttgttctgtgaaaagatttttggaccaaccaaggattgggaatgt
cattgtggtaaatacaagcgtgttcgttataaaggcgtagtttgtgatcgttgcggcgta
gaagtaacccgtcaaaaggttcgtcgcgagcgcatgggtcatattgaattagctgctcca
gtatcacacatttggtacttcaaagggattccaagccgcatgggcttagcgctagatatg
tctcctcgttcattagaggaagtaatctattttgcatcctatgttgtaacagatcctggt
gatacaccacttgagaaaaagcaactgttgtccgagaaagaatatcgcagctaccgtgag
aaatatggttatgcgttttctgctggaatgggcgcagaagctgttaagaaattgctgcaa
gacatcgatatcactaaggatcttgaacatttgaaggaagagctgaaaacagcacaaggc
caacgtcgtaatcgtgcgattaaacgtcttgaggttatcgaagctttccgtaattccaag
aatgctcctgagtggatggtacttgatgtacttcctgtaattcctcctgaattacgtccg
atggtacagctagatggaggtcgttttgcgacttctgacttgaatgatttgtatcgtcgt
gtaattaaccgtaacaaccgtttgaagcgtctgcttgatttaggagctccggatatcatt
gttcagaatgaaaaacggatgctgcaagaagctgttgatgcattgattgataatggtcgt
cgtggccgtccggtaacaggacctggtaacagaccgttaaaatccttgagtcatatgctt
aaaggtaagcaaggtcgtttccgccagaacttactaggtaaacgggtagattattcagga
cgttccgtaatcgttgtaggacctagcttgaaaatgtaccaatgtggacttcctaaagaa
atggctttggagcttttcaaaccgtttgttatgaaggaactagttaataaaggcttagcc
cataatattaaaagcgcaaaacgtaaagtagaacgtgttagcccagaggtatgggacgtt
ctagaagaagttattcgcgagcatccggttcttctgaaccgtgcaccaacgttgcataga
ttagggattcaagcgtttgaaccgattttagttgaaggacgcgcaatcaagctgcatcct
ttggtatgtacagcttacaatgccgattttgatggtgaccaaatggcggtccacgttcca
ctttctgcagaagcgcaagctgaagctagattgctgatgctggcatccggtaacattttg
aatccaaaagacggcaagccggttgtaacaccttcacaggatatggttctaggctgcttc
tacttaacaatggcggataagacctccaaaggttcctatttgatattggcttcagttaaa
gaagcattctccttgtatcaacgtggaagtgcatccttacacgcagttgttgcgattcaa
gctaaggttctgaacaagacgagctttaatgaaaaacaacagaatgcgatcttattaacg
acaatcggcaaaattatctttaacgatattttccctgctgatttcccgtatatcaatgaa
tcaacaaaaacaaatctgcttaatggtacgcctgaagagtattttgtatacgaaaaaggt
gctaacattaaagaaagaatcgatgcttttacggagaaattagccgttggtaaagagtat
ctgggttcaatcattgcagagtgcttccgtcgttaccaaacaaccttaacttcaacgatc
cttgataatatcaaaggccttggctttacgtactcgactaaatcgggtattaccattgct
gtatctgatgttactgttccgttagagaaggacaaaattattaaagattctgatgaaaaa
gtcagaatagttaccaatcagttccgtcgcggtttaatcaccgacgaagagcgttatgat
cgcgtaattagtatctggagcgatgcgaaggaagagattacaacgattctaatgaactcg
ttgcagaagttcaactccattaacatgatggttgagtctaaagcacgtggtaacaaatct
caaattacacagctaggcggtatgcgtggtctaatggccaatccgtccggtcgtattatt
gaattgccgatcaaatctaacttccgcgaaggcttaaccgttttggaatactttatttcc
actcatggagcgcgtaaaggtttggcggatacagcactaagaacagccgattccggatat
ctaactcgtcgacttgttgatgtggcgcaggatgttatcgtacgtgaagaggattgtggt
acagataagggctttaccgttactaagatccaagatggtaaagaagttattgaagatcta
tatgaccgtattgaaggtagatacgcattcgaaacgattaaacatccggaaacgggtgag
gttctcgttacccgtaatgagttaattgaagcttcaatcgcagatagtatcattaatgcc
ggcattgaaaaaatgcaaattcgttccgtattgagctgcagagcacgttggggcgtttgt
aagaaatgttatggccgtaacttggctactggtcaacacgttgaaattggggaagcagtt
ggtattattgcggctcaatccattggagaaccaggaactcaattgactatgcgtactttc
cataccggtggtgtggcaggagacgatattactcaaggtttgccgcgtattcaagaatta
tttgaagcacgtaatccaaaaggtcaagcgattatctcagaagttgacggcgtgattaaa
gaaatccgcgaagctaaggatcgtcgagaaatcgaagttcaaggcgaagcagaagctaag
atctatgcagtaacttacggatccagaattcgtgtaaccaaaggacaacaagtagaagcc
ggagatgagttaacagacggttctatcgatcctaaggacatgctgcggattaaaggtatt
cgtggagtacagaattacattcttcaagaagtacaacgcgtttatcgtaaccaaggtgtt
gaaattaatgataagcacattgaggttatgattcgtcaaatgcttcgtaagattcgaatc
gtggatgcagggaatactaccctattaccgggtgctttcgttgatattcatgaatatgaa
gcagctaataaaacagctttgtacgccggtgaagagccagcagttgctaagccagtgctt
cttggtattactaaagcctcattagaaacggattccttcttatccgcagcatcattccaa
gaaacaacaagagttcttacggatgcagcgataaaaggaaaagtcgatcaattgttgggc
ttgaaggaaaatgttatcattggtaagttaattccggctggtacgggtatggcgagatat
cgcaacattcgtttaaccaacccgaacgaaatcgcccttgctaacagtgccctgacagac
gaaaccattgaaaatgatggcgaagttgtagtaagcgctaagtaa

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