Paenibacillus psychroresistens: EHS13_15960
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Entry
EHS13_15960 CDS
T06328
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03030
DNA replication
ppsc03430
Mismatch repair
ppsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHS13_15960
03430 Mismatch repair
EHS13_15960
03440 Homologous recombination
EHS13_15960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsc03032
]
EHS13_15960
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_15960
Enzymes [BR:
ppsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EHS13_15960
DNA replication proteins [BR:
ppsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EHS13_15960
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EHS13_15960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
QGQ96267
UniProt:
A0A6B8RKB6
LinkDB
All DBs
Position
3568212..3572540
Genome browser
AA seq
1442 aa
AA seq
DB search
MIKKRERFELLLQQALFSSEIINGHFAEGYIDQVEVSRSNSQWTFTLAKKQILPSDIYQI
FCKTIRDKFAHIAQIDFIVKYDLAEVSSDSLINTYWAHCSEWIKKAVPSINGYIRDAKYE
LNGDVITVSILEEIGMEIVKKKSGELWIQRYFRDFFAREFTVRFNVTESNEIELKRVQYF
QQNEQEDKMFTQNLVSAIEKDVEASKATEGELKLMVGYEIRDIPVPIQQIVEEEKKITMQ
GMVFGIEVKVLKTGTTLYQFYITDFTDSLMVKAFVKTKEDLKIYNLIANGKWIKVRGKVE
YDRFGQPPELMLIPNDINEIVAPMDRMDNAEHKRVEFHLHTTMSTMDGITPIGEYVKTAA
RWGHKAIAVTDHSGVQSYPDANKAGKKHGVKIIYGVEANVVNDSIPIVLNSIDLDLESTT
YVVFDIETTGLSVMNNRIIEIAGVKMQDGKVIGEFSSFVNPHEIIPYNITQLTHITDDMV
KDAPEIESVLPQFAQFIGDAVLVAHNARFDMGFIQANCKTLGMPELMNPVLDTLELARFL
FPSMKNHRLNTLADKFKISLDNHHRAIADAEALGHILSSLIKETSERNIRNLHHLNDYAG
IDLRNTRPFHCCIYAKNAIGKKNLYKLISISHTEHYNKVPSIPKSKLIQLREGLHINSGC
DKGEFFEAVLNKSLEEAEEVAAFYDVLEIQPIGNYMHLVDRGFVGSRESLELTVRRICEM
GDRLNKPVIATGNVHYLHPREKINRDITIFGITGFSPLKDQNKPDVHLRTTEEMLREFQF
LGESKAMEVVVSNTSKLADEFEEISLFPKKGGPADNGLFSPIFEGADDEIRETCYRTAAS
LYAEPLPEIVIARLEKELKPIIQYGFSANYLISEKLVKKSNEDGYLVGSRGSVGSSFVAT
MLGISEVNPLPPHYICRACKYNEFFTDGSIPSGFDLPSKPCPNCGENLRGEGQDIPFETF
LGFKGDKVPDIDLNFSGEYQAIAHNYTKILFGPENVFRAGTIGTVADKTAFGYVKKYEED
KGKSWRNAELNRLASGCTGVKRSTGQHPGGIVVVPDYIDVEEITPVQFPADDQSSEWKTT
HFDYHAFEENFLKLDILGHDDPTMMRMLQDLTGIDPTTIPMNDQKVMSIFNSTEAIGVEP
HQIRSPVATFGVPEMGTKFVRQMLQETKPTSFADLLQISGLSHGTGVWLGNAQELIKKGT
CDIKTVIGCRDDIMLYLIYKANMDASLAFKITESVRKGRGLTEEWKDDMKKHKVPAWYID
SCEKIEYMFPKAHAAAYVISAVRTAYFKVYHPIAYYATYFSVRAEDFDVELFCKGYDAIL
RKLLEIESKGFQALPKERAMISILEMGLEMTSRKLNFKSIDIYKSDASRFIIEGDSLIPP
FSSVAGVGENAAKLIAVAKEYGDFLSIEDFQQKSKVSKTVIELLNALGCFGAMPESNQLS
LF
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaaacgcgaacgatttgaattattgctgcaacaagcacttttttccagtgag
atcattaatgggcattttgctgaaggatacatagaccaggttgaggttagtcgcagtaac
agtcaatggacctttacgcttgctaagaaacaaatcctaccttctgacatttaccaaatc
ttctgtaaaacgatccgtgataagtttgctcacattgctcagattgactttatcgtgaaa
tatgatttagcagaagtttcgtcagatagcttaataaatacctattgggcgcattgcagt
gaatggatcaaaaaggcggtgccgtcgattaatggttatattagagatgccaaatatgag
ctcaatggcgatgtgattacggtaagtattttagaagaaattggcatggagatagtcaaa
aagaaaagcggagaattatggatccagcgttattttcgtgatttttttgctcgagaattt
accgtacgttttaatgtgactgaatctaacgaaattgagttaaaaagagtgcaatacttt
caacaaaacgagcaagaagataaaatgtttacgcagaacttagtttccgcgattgagaag
gatgtggaagcttccaaagctactgaaggcgaattaaagctcatggtaggttatgaaatc
agagatattccggtacccattcaacaaattgttgaagaagagaagaaaattacgatgcaa
ggcatggtttttggaattgaggtcaaggtgctcaaaaccggtacaaccctctatcaattt
tatataacggatttcacggactccttaatggtgaaggcctttgtcaaaacaaaagaagat
ctaaaaatatataatttaatagcaaatggcaagtggataaaggttcgcggcaaagtggag
tatgatcgttttgggcagccgccagagctgatgcttattcctaatgatatcaatgaaatc
gtcgcaccaatggaccgtatggataatgctgaacacaaaagggtcgaatttcatttacac
acgactatgagcactatggatggaattacacctataggtgaatatgttaaaacagcagct
cgctggggacataaagctattgcggttaccgatcatagcggtgtgcaatcctatccagat
gcgaataaggcagggaagaaacatggagttaagatcatttatggggttgaagctaatgtt
gtaaatgactctattcctattgtacttaactctattgacttggatttagagagtacaacc
tatgttgtttttgatatagaaacgacaggtctgtctgttatgaacaatcgaattattgaa
atcgctggagtgaaaatgcaagatggcaaggtgattggtgagttctcaagctttgttaat
ccgcacgaaattattccttataatattacgcagctaactcatatcaccgacgatatggta
aaggatgccccagaaatcgaatctgtgcttccgcaatttgcccagtttattggagacgcc
gtattagttgcccataatgctagatttgatatgggttttatacaagccaattgcaaaaca
ttagggatgccagaactcatgaatccggtcctagatacattggagcttgcacgtttttta
tttcctagcatgaagaaccaccgtttaaacacattggcagataaatttaagattagcttg
gataatcatcatcgggcgattgcggatgctgaagcacttggccacattttatcaagttta
atcaaagagacatcagagcgtaatatccgtaatttgcatcatttgaacgattacgcaggg
attgatttgcgtaatacacgcccgtttcactgctgtatttatgcaaaaaatgcgattggc
aaaaagaatttatataagttaatttctatttctcataccgagcattacaacaaagtacct
tcgattcccaagagtaaattaattcaattaagagaaggtctgcacattaattcaggctgt
gataaaggcgagttttttgaagctgtgcttaataaatccttagaggaagcggaagaagtt
gccgcattctatgatgttctggaaattcagcctattggcaactatatgcatttagtggac
agagggtttgtcggcagcagggaaagtctggagctgacggttcgccggatttgcgagatg
ggagatcggctgaataagccggtcattgctacgggcaatgtccattatctccatccacgc
gaaaaaataaatcgcgatattaccatctttgggataacagggtttagccctttgaaggac
cagaataaaccagatgttcaccttcgtacaacggaggaaatgctgcgtgagttccaattt
cttggcgagtccaaggcgatggaagtcgtggtaagcaatacttctaaactagcagatgaa
tttgaagagatatcgttgtttcctaaaaaaggcggccctgctgataatggcttattttcc
ccaatctttgaaggtgcagacgatgaaatccgcgaaacctgttaccgaacagcggcttcg
ctttatgcagagccattaccggaaattgttatagcccgtctagaaaaggaattgaaaccg
attattcaatacggtttctccgccaactatttaatttcagagaagctagttaaaaaatca
aatgaagatggttacttggttggatctcggggatcagttggatcttcttttgtagcgact
atgctcggtatatcggaagtaaatcccttgccgcctcattatatttgcagagcttgtaaa
tataatgaattctttacggatggcagtattccaagcggatttgatttacctagtaagcca
tgccccaattgtggagaaaacctaagaggagaaggtcaggatattccttttgaaactttt
cttggctttaaaggcgataaagttcccgatattgacttgaacttttctggggaatatcaa
gctattgctcataattatacaaaaattttgttcggtccggaaaatgtttttcgtgcagga
accattggtactgtggcggataagacggcatttggttatgtgaagaagtacgaagaggat
aaagggaaaagctggcgtaatgcggagttaaaccggcttgcttcaggctgtacaggagtt
aaacgcagcacaggccagcatcctggcggaattgtagttgttccggattatatcgatgta
gaagagattaccccagtgcagttccctgcggatgatcaaagctcagaatggaagacaact
cattttgactaccatgcattcgaagaaaatttccttaaactcgatatcctgggtcatgac
gatccgactatgatgcgaatgctgcaggacttaacaggaattgatccaacaaccattccg
atgaatgatcaaaaggttatgagtatttttaattcaactgaggcaattggggttgaacct
caccaaatccgttcaccagttgctaccttcggagtacccgagatgggcactaaattcgtt
cgccaaatgcttcaagaaacaaagccaacctcatttgccgatttattgcaaatatctggt
ttgtctcatggtacaggcgtatggcttgggaatgctcaggagttaattaaaaagggtact
tgcgatattaaaacggttatcggctgtcgggatgacatcatgctttatttgatttataaa
gctaatatggacgcaagcttagctttcaaaataacggaaagtgtacgtaaaggtagaggg
ttaaccgaggaatggaaagacgatatgaaaaagcataaagtacctgcttggtatatcgat
tcctgtgaaaaaattgagtatatgtttcctaaggcgcatgccgccgcttatgttatttcc
gcagtacgaacggcttattttaaggtgtaccatcctattgcctattacgcgacctacttt
agcgttcgtgccgaagattttgatgtggagttattctgtaaagggtatgacgcaattcta
cgaaaattattggagattgaatcaaaaggctttcaagctttgcctaaagaaagagcgatg
atttccattctggaaatgggcttggagatgacgtcacgcaagttgaatttcaaatccatt
gatatctataaatcggatgcatcgcgctttattatagaaggagattcgctaattccacct
ttttcatcggtagcaggtgttggtgaaaatgccgctaagctaatagcggtggcgaaggag
tatggtgacttcttatcaatagaagactttcagcaaaaatccaaagtttccaaaacagta
attgagcttctaaatgcgttaggctgctttggggcaatgcctgaatccaaccagctttca
ttattttaa
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integrated database retrieval system