KEGG   Pseudomonas putida KT2440: PP_3260Help
Entry
PP_3260           CDS       T00114                                 

Gene name
ligD
Definition
(RefSeq) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppu  Pseudomonas putida KT2440
Pathway
ppu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PP_3260 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppu03400]
    PP_3260 (ligD)
Enzymes [BR:ppu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PP_3260 (ligD)
DNA repair and recombination proteins [BR:ppu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PP_3260 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-GeneID: 1046910
NCBI-ProteinID: NP_745403
UniProt: Q88HU3
LinkDB All DBs
Position
complement(3693666..3696167)
Genome map
AA seq 833 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLLGEKLGGVWNLFRTHLAGKKEQWMLVKSHDAQACSETEYSIVEALPDSVL
SERTLVPCKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHCDVIKYSADFD
EPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLYIPNVLSYEKAEAGQAAMVINRADTLLGAVQMNMLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHEHLAEVDDPWADMGKVRQSITARMRKQLGLE
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagccc
agcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgcatccagaaacac
gacgccagtcatttgcactacgacttccgcctggagctcgatggcaccctgaaaagctgg
gcgatccccaaaggcccgtcgttggaccccaaggtgcgccgcctggcggtgcatgtggag
gatcacccgctggactacgccgatttcgagggccatatcccggaaggccactatggtgca
ggggacgtgatcgtctgggaccgcggtatctgggagcctgaaggcgacgcgcatgaagcc
tacgccaaaggcaagctgcgattccgcctgctgggtgagaagctaggcggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgtgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccatgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcacccttgccagcacagttacagccacag
ctggcaacgttggtggactctccccccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtattctggcccgcatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggttgccgccctgcgcgcgctgggcatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaacgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggccaggacctgcgacagctaccgctgcagaaccgccgcaataca
ttgcgccaactgcttgagcacaaccattgcgacgtcatcaagtattccgccgacttcgac
gaacctgtccagtcactgctcgacagtgcctgccggctgaagctggaaggcctgatcggc
aagcgagttgacagtgtctacagcggccgccgtagcccggactggatcaagctcaagtgc
aagcaacgccaggagttcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggtgccctgctgctggccctgcacgacaacgacagtggccagctgcgctatgccggt
aaggtcggtaccggcttcaatgccacgacactggccagcatccacgcgcggctcaagccc
ctggaaatcgccaggccagccctgccctcgccgcctgccggagccgaagcgcgtggtgtg
cactggctgcgaccgcagttgttggcggaagtcgcctttgcccagatgacccgtgacggc
atcgtgcgccattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggcggcgagctgttc
ttccagaaaaacgcgggccaactgtacatacccaacgtactcagctacgaaaaggccgag
gccggccaggcagcgatggtcatcaatcgcgccgatacgctgctgggtgcggtgcagatg
aacatgctggagctgcacacctggaacgccacagacaaggatttcgataaaccggaccgt
tttgtcctcgacctggaccctgaccctgcgctgccctggaaggccatggtggaggcgacc
caactgaccctcaccctgctggacgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgagccgggtgggacgaggtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcattttcatcgactacctgcgcaacggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcatctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaatga

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