KEGG   Pseudomonas putida HB3267: B479_13240Help
Entry
B479_13240        CDS       T02389                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppuh  Pseudomonas putida HB3267
Pathway
ppuh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppuh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B479_13240 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppuh03400]
    B479_13240 (ligD)
Enzymes [BR:ppuh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B479_13240 (ligD)
DNA repair and recombination proteins [BR:ppuh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B479_13240 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGA73544
UniProt: L0FHZ0
LinkDB All DBs
Position
2891162..2893654
Genome map
AA seq 830 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDGQARSEAEYSIVDAQPDSVL
SDRTLVPRKPTAKKAAAPRRKAASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGY
RILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGENGAADFQAL
QNAFDTEHDEHITYYLFDLPFLGGQDLRQLPLQDRRDTLQRLLEHNESDVLKYSADFDQP
VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG
ALLLALHDNDSGELRYAGKVGTGFSATTLASIHARLKPLETAEPALPNPPTGAEARGVHW
LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEAL
GELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLKNRPVALVRAPDGLAGELFFQK
NAGQLHLPNVLSYDKAEAGQAAMVINRADTLIGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLALTLLAELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFS
HGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIW
REELPQLKGANQWNIGNVLERLGDVDDPWADYGKTRQSITVGMRKQLGLA
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggcccacgcgctgcagttctgcatccagaagcac
gatgccagccacctgcactacgacttccgcctggaactcgatggcacgctgaaaagctgg
gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag
gaccacccgctggactacgccgacttcgaaggccatatccccgaaggccattacggcgcg
ggcgacgtgatcgtctgggaccggggcatctgggagcccgaaggtgatgcgcatgaggcc
tatgccaagggcaaactgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac
ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcgcacgac
ggccaggcgcgtagcgaagccgagtacagcatcgtcgacgcccagcccgacagcgtgctc
agcgaccgcacgctggtgccgcgcaagccgacagcaaaaaaggccgccgcgccacgtcgc
aaagccgccagcaaaggccggaaggtgccgttgccggcgcagctgcagccacaactggcg
accttggtcgactccccgcccagtggcgactggcgctacgaggtcaagttcgacggttac
cgcatccttgcccgcatcgacggtgatgacgtgcgcctgttcacccgcaatggccatgac
tggagcggcaagatgcccaggcaggttgccgccttgcgtgcgctgggcctcgattcggcc
tggctcgatggcgaggtggtggtggctggcgaaaacggcgcggcggacttccaggcgctg
cagaacgctttcgacaccgagcatgacgagcacatcacctattacctgttcgacctgccc
ttcctgggcggccaggacctgcgccagttaccgctgcaggaccggcgcgacaccttgcag
cgcttgctggaacacaacgaatcggacgtgctcaagtactccgccgactttgaccagccg
gtcgaatccctgctcgacagcgcctgccggctgcaactcgaaggcctgatcggcaagcgc
gtcgacagcccctacagcggccgccgcagccccgactggatcaagctcaagtgcaagcag
cgccaggagttcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggctttggt
gccctgctgctggccttgcacgacaacgacagcggcgagttgcgctatgccggcaaggtc
ggcaccggcttcagtgcaaccacgctggccagcatccatgcccggctcaaaccattggaa
accgccgagccggccctgcccaacccgcccaccggggccgaagcccggggcgtgcactgg
ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg
cgccactcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag
cgcagcatgcccgccaagaccctgcccaagcgcaagcaggccaaggcccccgaggctttg
ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag
cgcgaggtcgccgagtactacgccgctgtcagccaatggatactgccccagctcaagaat
cgcccggtggcactggtacgtgctccggacgggctggccggggagctgttcttccagaag
aacgccggccagttgcatctgcccaacgtgctcagctatgacaaggccgaggccggccag
gcggcgatggtcatcaatcgcgccgacaccttgatcggcgcagtgcagatgaacatgctc
gaactgcacacctggaacgccaccgacaaggacttcgacaagcccgaccgcttcgtcctc
gaccttgacccggacccggcactgccgtggaaggccatgctggaagccacccaactggcc
ctcaccttgctggctgagctgggcctgaaggtttttctcaagaccagtggcggcaaaggc
atgcacctggtagtgccgctgacccggcgtgccagctgggatgaagtcaaggcattcagc
cacggcatcgtcgattacctggccaggttgttccccgacaggctcagtgccgtgtccggg
cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaacggcaagggggctacc
accgcctgcgcgtataccctgcgcgcacgcgaaggcctgccggtatccgtgccgatctgg
cgcgaggaactgccgcaactcaagggcgccaaccagtggaacatcggcaacgtgcttgaa
cgactgggcgatgtggacgacccctgggccgattatggcaagaccaggcaatcgatcacc
gtgggcatgcgcaagcagctggggctggcctga

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