Pectobacterium punjabense: E2566_06830
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Entry
E2566_06830 CDS
T06530
Name
(GenBank) endonuclease VIII
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E2566_06830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_06830
Enzymes [BR:
ppuj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
E2566_06830
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
E2566_06830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF4351
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
QJA19657
LinkDB
All DBs
Position
1510894..1511685
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AA seq
263 aa
AA seq
DB search
MPEGPEIRRAADKLVEAVVGKTLMRVWFAFPELKPYETQLVGQQVRQIETRGKALLTYFS
NDRVLYSHNQLYGVWRVVNAGESPETKRDLRIRLETQDRAILLYSASDIEMLTPETLSTH
PFLQRIGPDVLDLSLTPEQVCERLLLPRFRRRQFSGLLLDQAFLAGLGNYLRVEILWQAR
LAPQHTASQLNEEQLQILSRALLDIPRLSYNTRGTVDENHHHGAIFSFKVFHREGESCER
CGGTIERTMLSSRPFYWCPHCQS
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaggaccggaaattcgccgggcggccgataagctagttgaggcagtggtgggg
aaaacgctgatgcgtgtctggtttgcgtttccagaactgaagccgtacgaaacacaattg
gttgggcagcaggtcaggcagatcgaaacgcgggggaaggcgctgttgacctattttagc
aacgatcgggtgctgtatagccacaatcagctttatggcgtttggcgagtggtgaatgcg
ggggagtcgccggaaacaaaacgagatttgcgcatccggctggaaacgcaggatcgcgct
attctgctttacagtgcatccgatattgaaatgctgacgccggagacgctctcgacgcat
cctttcctgcaacgtattggcccggatgtgttggatctgtcgctgacgccggaacaggtc
tgtgagcgtttgttgctaccgcgttttcgtcgtcgccagttcagtgggctgttgttggat
caggcttttctcgcggggttgggaaattatctgcgcgttgagattctctggcaggcccga
ctggcacctcaacatacggcgtcgcagttgaatgaagaacagttgcagatactgagtcga
gcgctgctagatattccccggctgtcctacaacacgcgcggcaccgttgatgaaaaccac
catcatggtgcaattttctcgttcaaggttttccatcgtgaaggggaaagctgtgagcgc
tgcggtggaaccattgaaagaacgatgctgtcatcgcgcccgttttattggtgcccgcac
tgtcagagctag
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