Pandoraea pulmonicola: RO07_04245
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Entry
RO07_04245 CDS
T03553
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RO07_04245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppul03019
]
RO07_04245
03009 Ribosome biogenesis [BR:
ppul03009
]
RO07_04245
Enzymes [BR:
ppul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RO07_04245
Messenger RNA biogenesis [BR:
ppul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RO07_04245
Ribosome biogenesis [BR:
ppul03009
]
Prokaryotic type
rRNA processing factors
RO07_04245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJC19889
UniProt:
A0A378Z8K3
LinkDB
All DBs
Position
4916712..4919975
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEGRHGFLPFKEIARAYFRDGSDVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAELTLPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAIEGAAHNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKNQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVAAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARASEDDPAGYSKKKEDVRPRQEAAVKGITP
EQPAPAAQPRPEAVAPAAAPAAAPVRSGGFFGFVKRLLGLESAAPAPVKAEEPAKPAARP
PRERHERPHQQNRNRRGNARDENKAGKDNAGQTAREGREGREGRGARPERAERNERNEQR
QEGRDKRERDDAQRQPAQDVRAEEGREPREGRERGGRRDRNERRERRPAEGAEGQQAATQ
RVAQPSAPAAALVAPQDDVEQDRLTAQVEGAPMAGEEGEQANEERRRSRRRGRRGGRRER
EANEQQLPADGEQGETIVTEDDVESSRAPVLTAEAAEHAATDALARAAAPLAAVAAAPAV
ASPVASITPHTQQAEPTPAPVQAEQVPAHTVPVATVVETAPAATPEVPAPVVVEPVAAAP
LPSTDASVAPVVPPVNAPLPTATPVPAQPTIPAEALTEIAATAASATTVASAPAPVETAQ
AQQVASTSSVTPPAEVEAAKAVDPVERPAAAIAAVPEAAAAATEVVTQKPAAVAVEPTLE
RSALESTLASVGLVWVHTDADKHRAAKEAAAQAVPAPRVPRERRPVAPLNDGPMEQVETR
APSNHAA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggccattgtcgat
gggcaaaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaat
atctacaagggtgtcgtcacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggccgccacggcttcctgccattcaaggaaattgcccgcgcatacttccgcgac
ggttccgatgtgcgcaatgcgcgcattcaggacgccctctcagaaggccaggaactcatc
gttcaggtcgaaaaggaagaacgcggcaacaagggcgccgccctcacgacgttcatttcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgtggcggcggcgtgtcgcgc
cgcatcgagggcgaagaccgtcaggaactgcgcgaaacgatggcggagctcacactgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggccgctcggccgaagaactgcag
tgggatctgaactatctgctgcagttgtggcacgctatcgaaggcgccgcccacaacatc
gaactgccgcgcgactcggccctcatctatctcgagtcgagcctcgtcattcgcgccatt
cgcgactatttccagccggacatcggtgaaatcctcatcgatacggaagaaatttccgag
caggcacgcaacttcatgcaggtggtcatgcccgatcacctcaatcgcgtgaagcaatat
cgcgacgacgtgcccctgttctcccgtttccagatcgaacaccagatcgagacggcttac
tcgcgtcaggtgccgctgccctcgggtggcgccatcgtgatcgaccacacggaagccctc
gtgtcgatcgacgtgaattcggcgcgcgccaccaagggcgccgacatcgaggaaaccgcc
ctgcgcaccaatctggaagctgccgacgaagtcgcccgccagttgcgtctgcgcgatctc
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagaaccagcgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgaccgggcccgcgtccagatgggcaagatc
tcgcgcttcggcctgatggagctctcgcgtcagcgtctgcgcccgtcgctgtcggaaggc
acgcacgtgacctgcccgcgctgcaacggcaccggccacatccgcgacgccgaatcgtcg
gcgctgcaagtcctgcgcatcatccaggaagaagcgatgaaggagcacacggcagccatc
cactgccaggtgccggtcgaagtcgcggcgttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcccgcttcaaggttggcgtgctgctgatccccaacaagcatctcgaa
acgccgcattacaagctcgagcgcctgcgcttcgacgatccgcgtctcgatgcaccgaag
gcaagctatgcgctcgccgaggaagccgcgcgcgcatcggaagacgatccggccggctac
agcaagaagaaggaagacgtccgtccgcgtcaggaagcggccgtgaagggcatcacgccc
gagcaaccggcaccggctgcgcagccgcgtccggaagccgtcgcaccggcagcggcccct
gccgccgcaccggtccgcagcggcggtttcttcggcttcgtgaagcgtctgctcggcctc
gagtcggcagcaccggcgcccgtcaaggccgaagaaccggccaagccggcggcgcgtccg
ccgcgtgagcgccacgagcgtccgcatcagcagaaccgcaaccgtcgcggcaacgcacgc
gacgaaaacaaggcgggcaaggacaatgccggccagacggcccgtgagggtcgggaaggt
cgcgagggccgcggcgctcgtccggagcgtgccgagcgcaatgaacgcaacgagcaacgc
caggaaggccgcgacaagcgtgagcgcgacgacgcccagcgtcagcccgcacaggacgtg
cgtgccgaggaaggccgtgaaccgcgtgaaggccgtgagcgtggcggccgccgtgaccgc
aacgagcgtcgcgaacgccgtccggcggaaggcgccgagggtcaacaagccgcaacgcaa
cgcgtcgctcagccgagcgcaccggctgccgcgctggtggccccgcaggatgacgtggag
caagatcgtctgaccgcacaggtcgaaggcgcaccgatggcgggcgaagaaggcgagcag
gcgaatgaagagcgccgccgcagccgtcgccgcggccgtcgtggtggtcgtcgcgaacgc
gaagccaacgagcagcaactgccggcagacggcgagcaaggcgaaaccatcgtcacggaa
gacgacgtcgaaagctcgcgtgcgccggtgttgactgccgaagccgccgagcatgccgcc
accgacgcgctggcacgtgccgccgcgccgctcgccgccgtggcagcagctccggctgtc
gcctcgccggtcgcctcgatcaccccgcacacccagcaagccgagccgacgcccgcgccg
gttcaagcggagcaagtgccggcccacacggttccggtcgccacggttgtggaaaccgcg
cccgccgccacgccggaagtgccggccccggtggtcgtcgaaccggttgctgcggccccg
ctgccgagcaccgatgcgagcgtcgcgccggtcgtgccaccggtgaatgccccgctgccg
accgccacgccggtcccggcccagccgacgatcccggccgaagccctgacggaaatcgct
gcgacggctgcatcggcaaccacggttgccagcgcgccggcaccggtcgaaacggctcag
gctcaacaagtcgcatcgacctcctcggtgactccgccggcagaagtcgaagcggcgaag
gccgtggatcccgtggaaaggccggccgcggcaatcgccgcggttccggaagctgctgcc
gccgcgacggaagtcgtcacgcagaagccggccgccgtggctgtcgagccgacgctggaa
cgcagcgcgctggaatcgacgctcgcaagtgtcggtctggtgtgggtccacaccgatgcc
gacaagcatcgcgccgccaaggaagccgccgcgcaagccgtgccggcaccgcgcgtgccg
cgcgagcgtcgtcccgtcgcgccgctcaacgacggcccgatggagcaggtggaaacacgc
gcaccgtcgaaccacgcagcttga
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