KEGG   Pseudomonas putida NBRC 14164: PP4_30630Help
Entry
PP4_30630         CDS       T02707                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppun  Pseudomonas putida NBRC 14164
Pathway
ppun03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PP4_30630 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppun03400]
    PP4_30630 (ligD)
Enzymes [BR:ppun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PP4_30630 (ligD)
DNA repair and recombination proteins [BR:ppun03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PP4_30630 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: BAN54916
LinkDB All DBs
Position
3465627..3468095
Genome map
AA seq 822 aa AA seqDB search
MAKPLQEYLRKRDFNATPEPAGKRAHPRPAHGLQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGLWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGEARSEADYSIVEALPDSVL
SDRTLVPRRPARAATSTRKRKASAGALPEMLQPQLATLADSPPEGDWRYEVKFDGYRMLA
RIDGDDVRLFTRNGHDWSAKLPHQVQALKALGLDSAWLDGEMVVTDENGVADFQALQAAF
DNEHDDDITYYLFDLPYLGGKDLRELPVQDRRATLAKLLKHNASAILKFSEDFNQPVDAL
LDSACRLGLEGLIGKRADSPYVGRRSSDWVKLKCTQRQEFVIVGYTAPKGSRQGFGALLL
ALHDTDSGQLRYAGKVGTGFSAATLTSILTRLKPLHTAKPPLPEPPSGADARGVHWLKPE
LLAEVAYAQMTRTGIVRHAVFHGLRDDKPATAIALERAMPVKNAAHAEPKGLSNLHLTHP
DRVIDKTSGTSKRQVAEYYAQVADWLLPQLEHRPVALVRAPEGLDGELFFQKHAGQLHLP
KLTSYTKAQAGQAAMVLNSAESLLGAVQMNMLELHTWNATDKNFDRPDRFILDLDPDPAL
PWKAMLEATQLPLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWEEVKDFSHALVKHMA
DLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELPKLK
SANQWNIGNLQARLAQVDDPWAELGSTRQSITLRMRKQLGIA
NT seq 2469 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtacctgcgcaagcgtgacttcaacgccacacccgagccg
gccggcaagcgtgcccacccacggccggctcacgggttgcagtactgcatccagaagcac
gacgccagccacctgcactatgactttcgcctggagctggatggcaccctgaaaagctgg
gcgattcccaagggcccttccctcgaccccaaggtccgccgcctggccgtgcatgtagaa
gaccatccgctggactacgccagcttcgaagggcacatccctgaaggccactacggcgcc
ggcgacgtgatcgtgtgggaccgggggctctgggagcccgaaggcgacccgcgcgaggcc
tatgccaagggcaagctgcgctttcgcctgcaaggtgaaaagctgtcgggggtctggaac
ctgtttcgtacccacctggctggcaagaaagagcagtggatgctggtcaagtcccacgat
ggcgaggcccgcagcgaagcggactacagcatcgtcgaagccctgccggacagcgtattg
agcgaccgtacactggtcccccgccgcccagccagggcggcgacctccacgcgcaagcgc
aaggccagcgctggcgccctgccggagatgctccagccgcagctggcaaccctggccgat
tccccccccgagggtgactggcgatacgaggtcaagttcgatggttaccgcatgctggcc
cgcatcgacggggacgatgtgcgcctgtttacccgcaatggccacgactggagcgcaaag
ctgccccatcaggtgcaggcgctgaaagcgttggggctcgactcggcatggctggacggt
gagatggtggtcactgacgagaacggcgtggccgacttccaggccttgcaggccgcgttc
gacaacgagcacgacgatgacattacctactacctgttcgacctgccctacctcggcggc
aaggacctgcgtgaattgcctgtgcaagaccgccgggcgaccttggccaaactgctgaag
cacaacgcatcggccatcctgaagttttccgaagacttcaaccagccggtcgacgcgctg
ctcgacagcgcctgccggttaggcctggaaggcctgatcggcaagcgcgccgacagcccc
tacgttggccggcgcagcagcgactgggtcaagctcaagtgcacgcaacgccaggagttc
gtgatcgtcggctacaccgcgcccaagggcagccgccaaggctttggggccctgctgctg
gcgctgcacgacaccgacagcggccagttgcgctacgccggcaaggtgggcaccggcttc
agtgctgccacgctgacgagcatcctcacccgcctgaaacccctgcacaccgccaagcca
cccttgcctgagccccccagcggtgccgatgcgcggggcgtgcactggctcaagccagaa
ctgctggccgaggtcgcctacgcccagatgacccgcacagggatcgtgcgccatgcggtt
tttcacgggttgcgcgacgacaagcccgccactgccattgccctggaacgtgcaatgccg
gtaaagaacgcagcacatgcagagcccaagggtttgagcaacctgcacctgacccacccc
gaccgcgtgatcgacaagaccagtggcaccagcaaacgacaggtggcggagtactacgcc
caagtcgccgactggctgctgccacagctcgaacaccgccccgtggcgctggtgcgcgca
ccggagggcctggacggcgagctgttctttcagaagcatgcggggcagttgcacctgccc
aagctgaccagctacaccaaggcccaggccggccaggcggcaatggtgctcaacagcgcc
gagagcctattgggcgcagtacagatgaacatgcttgaactgcacacctggaacgccacc
gacaaaaatttcgacaggcctgaccgcttcatcctcgacctcgaccccgacccggcattg
ccatggaaggccatgctcgaggccacccagctgcccctcaccctgctcgatgagctgggc
ctgaaggtgtttctcaagaccagcggtggcaaaggcatgcacctggtcgtgccgctcacc
cgtcgggccggctgggaggaagtgaaggacttcagccatgccctggtcaaacacatggca
gacttgttcccggaccggctcagcgcggtctccgggcccaagaaccgggtcgggcgcatc
ttcatcgactacctgcgcaacggcaagggcgctaccaccgtggccgcctactcgctgcgc
gcccgcgaaggcctgccagtgtcggtgccgatctggcgcgaggagctgcccaaactcaag
agtgccaaccaatggaatatcggcaacttgcaggcgcggcttgcgcaggtggacgaccct
tgggccgagctgggctcgacccggcaatcgatcaccctgcgcatgcgcaagcaactgggg
atcgcatga

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