Pseudomonas putida NBRC 14164: PP4_38090
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Entry
PP4_38090 CDS
T02707
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
ppun
Pseudomonas putida NBRC 14164
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppun03400
]
PP4_38090 (sbcD)
DNA repair and recombination proteins [BR:
ppun03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PP4_38090 (sbcD)
Archaeal homologous recombinant proteins
PP4_38090 (sbcD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BAN55662
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Position
4339216..4340454
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AA seq
412 aa
AA seq
DB search
MRLFHTSDWHLGQSLHGQERDFEHACFLEWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ
ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEGQLDA
ERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPSLGDDYLQGITQVHQQLITAAQAKRKKD
QALIAISHAHMAGGSVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKPQKVNREER
IRYSGSPIPLSFAEINYPHQVLEVELDGTELVSVEPRPVPRAVALQRVGPAPLGELLQQL
ADLPVIDLLEDPNRQPWLEVRVILDEPQPDLRQQIETALEGKAVRLIRISAEYAGRNNAE
DDDLAFVELSQMTPQDLFSRAWEQAYGNPADEQALADFALLLQDVQQEEEQP
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttcatacctccgactggcacctgggccaaagcctgcacggccaggaacgc
gacttcgaacacgcctgcttcctcgagtggctgctcggccagctgcgcctgcgccagccc
gatgcgctgctgattgccggcgacatcttcgacacggtcaacccgccggtcaaagcccag
gagcgcctctacgacttcatcgtccaggcccatgagcaacagcccaagctggatatcgtg
atgatcgccggcaaccacgactccggctcgcgcatcgagctgcccgccgcattgatgcgg
cgcctgcgcacccatgccctgggccgtgtgcactggctggacgaaggccagctggatgcc
gagcgcctgttgatcccactgaccaacggccgcggcaaggtcgccgcatggtgcctggcc
ctgcccttcctgcgcccggccgaggtcaccggcccgagcctgggcgacgactacctgcaa
ggcatcacccaggtccaccagcaactgatcaccgccgcgcaagccaagcgcaagaaagac
caggcgctgatcgccatcagccatgcgcacatggccggtggctcggtgtcggaagactcg
gagcgcagcctgatcatcggcaacgccgaggcactgccggccaagctgttcgacaaggcc
atcagctatgtcgccctgggccacctgcacaaaccgcagaaggtcaaccgcgaagaacgc
atccgctacagcggctcgccgatcccgctgtcgttcgccgaaatcaactacccgcaccag
gtgctggaagtggagctggacggcaccgaactggtcagcgtcgaaccgcgcccggtaccg
cgcgcggtggccctgcaacgggttggcccggcacccttgggcgaactgctgcaacagctg
gccgacctgcccgtgatcgacctgctcgaagaccccaaccgccagccctggctggaggtg
cgggtgatactggacgagccgcaacccgacctgcgccagcagattgaaactgcactggaa
ggcaaggctgtgcggctgatccgcatcagcgccgaatacgccggccgcaataacgccgaa
gacgatgacctggcctttgtcgagctttcccagatgaccccgcaagacctgttcagccgc
gcctgggagcaggcttacggcaaccccgcagatgagcaggcgctggccgactttgccctg
ctgttgcaggacgtgcagcaggaagaggagcagccatga
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