Pseudomonas putida H8234: L483_02305
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Entry
L483_02305 CDS
T02706
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L483_02305 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pput03021
]
L483_02305 (rpoB)
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_02305 (rpoB)
Enzymes [BR:
pput01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L483_02305 (rpoB)
Transcription machinery [BR:
pput03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L483_02305 (rpoB)
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L483_02305 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AGN77553
LinkDB
All DBs
Position
499861..503934
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTELTTDLLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVVTDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMIEEQRKAAELRVFLTEVYNEIGGRQENLAEFTDEEILALAHNLKKGVPMATP
VFDGAKESEIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcagttccgcgacgtcggcctgcacgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtatgtaggctatcgcctgggc
gagcctgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagactcacagctccggcaagctgctgtactccgctcgcatc
atcccttaccgcggttcctggctggacttcgagttcgacccgaaagactgcgtgttcgta
cgtatcgaccgtcgccgcaaactgccggcgtcggtgctgttgcgcgccctgggttacagc
actgaagaagtgctgaacaccttctacaccaccaacgtgttccacatttccggcgaaaaa
ctcagcctggaactcgtgccgcagcgtctgcgtggtgaagttgcggtcatggacatccat
gacgaaaccggcaaggtcattgtcgagcagggccgccgtattactgcgcgccacatcaac
cagctcgagaaggccggcgtcaagcagctggacgttccaatggaatacgtcctgggtcgc
accactgccaaggccatcgtgcacccggctactggcgagatcctggctgagtgcaatacc
gagctgaccactgatctgctgatcaaagtcgccaaggcacaggtcgtccgtatcgagacc
ctgtacaccaacgacattgattgcggtccgttcatctccgacaccctgaagatcgacacc
accagcaaccagctggaagccctggtcgagatctaccgcatgatgcgtccaggcgagccg
ccgaccaaggatgccgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgctgtcggtcgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcaggcgtgctgagcaaggaagacatcgtcgaggtcctcaagaccctggtcgatatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtacgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgtctgtcgatggcggaaagcgaaggcttgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctctgcgctcggcccg
ggcggtctgacccgtgagcgtgctggcttcgaagtccgtgacgtacacccgactcactac
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgtgtggtgaag
gaaggcgttgtcagcgacgacatcgtgttcctgtcggcaatcgaagaagcggatcacgtc
atcgcccaggcttcggccgcgatgaacgacaagaagcaactgatcgatgagctggtagct
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggtagtttccgttgctgcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgtgct
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtggttgctcgccgtggtggcgtgatcgactcggtcgacgccagccgtatcgttgttcgc
gtcaacgacgacgaggtggaaaccggcgaagcaggtgtagatatctacaacttgaccaag
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgac
aaggttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagatcgcttcaccaccatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaaactggacgaagccggtattgtctacgtgggtgct
gaagtcggcgctggtgacatcctggttggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcaatcttcggtgagaaggcgagcgacgttaaagac
acctccctgcgcgtgccaactggcaccaagggcactgtcattgacgtacaggtcttcacc
cgtgatggcgtcgagcgcgatagccgcgctctggccatcgagaagatgcagctggacgag
attcgcaaggacctcaacgaagagttccgcatcgtcgaaggtgcaaccttcgagcgtctg
cgttctgccctgaacggccaggtggtcgacggtggcgcgggcctgaagaaaggcaccgtg
gtcaccgacgaagtgctggacggtctggagcacggccagtggttcaaactgcgcatggct
gaagatgcactgaatgagcagctggaaaaggctcaacagtacatcgtcgaccgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccgggcgtactgaagatcgtcaaggtctacctggcaattcgccgtcgcatccagccgggt
gacaagatggctggtcgtcacggtaacaagggtgttgtctcggtcatcatgccggttgaa
gacatgccgcacgatgccaacggtactccggtcgacgtcgtactgaacccgctgggtgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaagggc
ctgggcgaaaagatcgaccgcatgatcgaagagcaacgcaaggctgctgagctgcgcgta
ttcctgaccgaggtctacaacgagatcggcggtcgtcaggaaaacctcgccgagttcacc
gacgaagagatcctggccctggcacacaacttgaagaagggcgtgccgatggctactccg
gtcttcgatggtgccaaggaaagcgagatcaaggccatgctgaagctggccgatctgcca
gagagcggccagatggtgctgttcgatggccgcaccggcaacaagttcgagcgtccggtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatatggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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