KEGG   Pseudomonas putida H8234: L483_11550Help
Entry
L483_11550        CDS       T02706                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pput  Pseudomonas putida H8234
Pathway
pput03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pput00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    L483_11550 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pput03400]
    L483_11550 (ligD)
Enzymes [BR:pput01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L483_11550 (ligD)
DNA repair and recombination proteins [BR:pput03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     L483_11550 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S YjeF_N
Motif
Other DBs
NCBI-ProteinID: AGN78849
UniProt: R9V1S5
LinkDB All DBs
Position
complement(2493728..2496193)
Genome map
AA seq 821 aa AA seqDB search
MAKPLQEYQRKRDFNATPEPAGKRARPRSAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGSIPEGHYGAGDVIVWDRGVWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQAHSETDYSIVEALPDSVL
SERTLPPRSPAKATTTRHKRAGRKALPDILQPQLATLVDSPPSGDWRYEVKFDGYRILAR
IDGDDIRLFTRNGHDWSAKMPRQVEALKALGLDSAWLDGEMVVVDDNGVADFQALQNAFD
TEHDERITYYLFDLPWLGGEDLRALTLQQRRATLARLLEGHASQVLRYSADFEEPVESLL
DSACRLELEGLIGKRADSPYVGRRSSDWVKLKCKQRQEFVIVGYTDPKGSRNGFGALLLA
LHDHDSGQLRYAGKVGTGFSAATLDSIHARLKPLQTDRSPLPKPPTGAEARGVHWLRPQL
LAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPTKRAAQTEPENLGTLRLTHPD
RVVDATTGTTKREVAQYYAQVADWLLPQLKDRPVALVRAPDGLSGELFFQKNAGQLHIPK
VLSYNKAQAGQAAMVLNGAESLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPALP
WKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVNHMAG
LFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELSQLKG
ANQWNIGNLHTRLAQVEDPWAEMGKTRQSITLRMRKQLGIA
NT seq 2466 nt NT seq  +upstreamnt  +downstreamnt
atggccaaacccctacaggagtaccagcgcaagcgcgacttcaatgccacgcccgagccg
gctggtaaacgcgcccgcccccgctcggcccatgcgctgcagtactgcatccagaagcac
gatgccagccacctgcattacgattttcgcctggagctcgacggcaccctcaagagctgg
gccatccccaagggcccctcactggatcccaaggtccggcgcctggcagtgcatgtagag
gatcatccgctggattacgccaacttcgaaggaagcatccctgaaggccactacggcgcc
ggcgatgtcattgtctgggaccggggtgtgtgggagcccgagggcgacccgcgcgaagcc
tatgcaaagggcaagctgcgctttcgcctgcagggcgagaaactgtcaggggtctggaac
ctgttccgcactcacctggccggcaagaaagagcagtggatgctggtcaagtcccatgat
gggcaggcacacagtgaaacggactacagcattgtcgaggccctgccggacagcgtgctg
agcgagcgcaccctgcccccgcgcagcccggccaaggcgaccaccaccaggcacaagcga
gccggccgcaaagccctgccggatatactccagccgcaactggccacgttggtcgattcc
ccgccaagcggcgattggcgctacgaagtcaagttcgacggctaccgcatcctggcgcgt
atcgacggtgacgacatacgcctgtttacccgtaatggccacgactggagtgcgaagatg
ccccggcaggtcgaggcgctcaaggccctgggcctcgactcggcatggctggacggcgag
atggtagtggtcgacgacaacggcgtggccgacttccaggctttgcagaacgccttcgac
accgagcatgacgagcgcatcacctactacctgttcgacctgccctggctgggcggtgag
gacctgcgagcactgacgctgcaacagcgccgtgcaaccctcgcccggttgctggaaggc
catgcatcgcaggtactcaggtattccgccgattttgaggagcccgtcgagtcactgctc
gacagcgcctgccgactggaactcgaaggcttgatcggtaaacgtgccgacagcccttac
gttggccggcgcagtagcgactgggtcaagctcaagtgcaagcagcgccaggaattcgtg
atcgtcggctacaccgaccccaagggcagccgcaacggcttcggcgccctgctgctggcc
ttgcacgaccacgacagcggccagctgcgttacgccggcaaggtcggcacgggcttcagc
gcggccaccctggacagcattcacgcccgcctcaagccgttgcaaaccgacagatccccc
ttgccgaaaccacctaccggtgccgaagcccgcggcgtgcattggctcaggccacagctg
ctggcagaggtcgcctatgcccagatgacccgcgaaggcatcgtgcgtcactcggtgttc
cacggcctgcgtgacgataaacctgccaccgccatcgacctggagcgagcaatgcccacc
aagcgcgcagcacagacagaacccgagaacctgggcaccctgcgcctgacccaccccgac
cgcgtggtcgacgcaaccacgggcaccaccaagcgcgaggtcgcccagtactacgctcag
gtcgccgactggctgctgccccagctcaaggaccgacctgtagccctcgtccgcgccccg
gatggtctgagcggcgaactgttctttcagaaaaacgccggccagctgcatattcccaag
gtgctcagctacaacaaggcccaggccggccaggcggccatggtgctcaacggcgccgaa
agcctgctgggcgcggtgcagatgaacacgcttgaactgcacacctggaatgccaccacc
aaggatttcgataaacccgaccgctttgtcctcgacctggaccctgacccggcgctgccg
tggaaagccatgctcgaggccacccagctgacccttaccctgctcgacgaactgggcctg
aaggtgtttctcaagaccagcggcggcaagggcatgcacctcgtcgtacccttgacccga
cgcgctggctgggacgaggtgaaggacttcagccatgccctggtcaatcacatggccggg
ctgttccctgatcgtctcagcgccgtgtccgggccgaagaaccgggtcgggcggatcttt
atcgactacctgcgtaacggcaagggtgccaccaccgtcgccgcctactcgctgcgggcc
cgcgagggcctgccggtgtcggtgccgatctggcgtgaggaactgagccagctcaagggt
gccaaccagtggaacatcggcaaccttcacacgcggcttgcacaggtcgaagacccgtgg
gccgaaatgggcaagacacgccagtcgatcacgttgcgtatgcgcaagcagttgggaatt
gcatga

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