KEGG   Pseudomonas putida H8234: L483_17380Help
Entry
L483_17380        CDS       T02706                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pput  Pseudomonas putida H8234
Pathway
pput03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pput00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    L483_17380 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pput03400]
    L483_17380 (ligD)
Enzymes [BR:pput01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L483_17380 (ligD)
DNA repair and recombination proteins [BR:pput03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     L483_17380 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGN79198
UniProt: R9V746
LinkDB All DBs
Position
3650402..3652903
Genome map
AA seq 833 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRVQALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWEPEGDAHDA
YAKGKLRFRLQGEKLSGVWNLFRTRLDGKKEQWMLVKSHDDQARSEADYSVVQAQPDSVL
SDRTLVPRKAAAKKAAAPRASRKRTVKGPKVPLPAQLSPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGDDIRLFTRNGHDWSSKMPRQIAALRELGIDAAWLDGEMVVADENGAADFQ
ALQNAFDTEHDDAITYYLFDLPFLGGQDLRQVALQGRRDTLRQLLERDESGVLKFSADFD
EPVQSLLDSACRLELEGLIGKRADSPYSGRRSPDWVKLKCKQRQEFVVVGYTDPKGSRSG
FGALLLALHDDDSGQLRYAGKVGTGFSTATLASIHARLKPLQIAKPALAKPPTGAEARGV
HWLQPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPTQTVPKRNKQAKAP
ENLGELRLTHPDRVIDATTGVTKREVAEYYASVSQWILPQLKQRPVALVRAPDGLAGELF
FQKNAGQLHIPNVISYEKPEAGQAAMVINRPDTLLGAVQMNMLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHLVVPLTRRSGWDEVK
DFSHAIVDYLAKLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSV
PIWREELAHIKAANQWNIANLHERLAEVDDPWAEMGKVRQSITAHMRKQLGLK
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggtgcaggcgctgcagttctgcatccagaaacat
gacgccagccacctgcactacgacttccgcctggagctggatggcaccctgaaaagctgg
gcgatccccaaaggcccgtcgctcgaccccaaagtgcgccgcctggccgtgcacgtcgag
gaccacccgctggattacgccgacttcgaggggcatatccccgaaggccactatggtgca
ggtgatgtgattgtctgggatcgcggtgtatgggagcccgaaggcgatgcgcatgatgcc
tacgccaaaggcaagctgcgtttccgcctgcaaggcgaaaagctcagcggtgtgtggaac
ctgtttcgcacccgcctggatggcaagaaagagcaatggatgctggtgaaatcacacgac
gaccaggctcgcagcgaggccgactacagcgtcgtgcaggctcagcccgatagcgtgctt
agcgaccgcaccctggtaccgcgcaaagccgctgcgaaaaaagccgccgcaccgcgcgcc
agccgcaagcgcaccgtcaaaggcccgaaggtgcccctgcctgcacagctgagtccgcag
ttggcaaccttggtcgactcgccccccagcggggactggcgctacgaggtcaaattcgac
ggttaccggattctggcccgtatcgagggtgatgacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccgccagatcgccgcgctgcgcgagctgggcatcgat
gcagcctggctcgatggtgaaatggtggtggctgacgaaaatggcgcagccgatttccag
gcgttgcagaacgccttcgacaccgagcacgatgacgccattacctactacctgttcgac
cttccgttcctcggtggccaggacctgcgccaggtagcgctgcagggccggcgcgacacc
ttgcgccaactgcttgagcgcgatgagtccggtgtactcaagttctctgccgacttcgac
gagcccgtgcaatctttgctcgacagcgcctgccggcttgagctggagggtttgatcggc
aagcgtgccgacagcccgtacagcggccgtcgcagcccggactgggtcaagctcaagtgc
aagcaacgccaggagttcgtggtcgtcggttataccgaccccaaaggtagccgcagcggc
ttcggggccctgttgctggccctgcatgacgacgacagcggtcagttgcgctacgccggc
aaggttggcaccggcttcagcacggcgaccctggccagcatccatgctcggctcaaaccc
ctgcaaatcgccaagccagcgttggccaaaccgcctaccggtgccgaagcgcgcggtgtg
cactggctgcaaccgcaattgttggccgaagtcgcctatgcccagatgacccgagacggc
atcgtgcgccactcggtgttccatggcctgcgcgatgacaaggcggccaccgccatcgac
ctggagcgcgccatgcctacccagaccgtgcccaaacgcaacaagcaggcgaaggcgcct
gaaaacctgggtgaactgcgcctgactcaccccgaccgggtgatcgacgccaccaccggc
gtgaccaagcgcgaggtcgccgagtactacgccagcgtcagccagtggatcctgccccag
ctcaagcaacgcccggtggcgctggtgcgcgccccggacggcctggccggggagctgttc
ttccagaaaaacgcaggccagctgcacatacctaacgtcatcagctatgaaaagcccgag
gccggccaggcggcgatggtcatcaaccgcccggacaccctgctaggtgctgtgcagatg
aacatgctcgaactgcacacctggaacgccacggacaaggacttcgacaaaccggaccgc
ttcgtacttgacctggaccccgaccccgcgctgccctggaaggccatgctggaggccacc
cagctcaccctcaccctgctcgacgaactgggcctgaaggtgttcctgaaaaccagtggc
ggcaagggtattcacctggtcgtgcccttgacccggcgatcgggctgggacgaggtcaag
gactttagccacgccatcgtcgattacctggccaagctgttcccggatcgcctcagtgca
gtgtcggggccgaaaaaccgcgtggggcggatcttcatcgactacctgcgcaacggcaag
ggcgccaccacagcctgtgcctactccttgcgtgcccgtgaggggttacctgtgtcggta
ccgatctggcgcgaggaactggcgcacatcaaggctgccaaccaatggaacatcgccaac
ctgcacgagcggctggcagaagttgatgacccatgggcggagatgggcaaggtacgccag
tccatcaccgcacacatgcgcaagcaactggggctgaaatga

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