KEGG   Pseudomonas putida H8234: L483_25935Help
Entry
L483_25935        CDS       T02706                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pput  Pseudomonas putida H8234
Pathway
pput03030  DNA replication
pput03410  Base excision repair
pput03420  Nucleotide excision repair
pput03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pput00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L483_25935
   03410 Base excision repair
    L483_25935
   03420 Nucleotide excision repair
    L483_25935
   03430 Mismatch repair
    L483_25935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pput03032]
    L483_25935
   03400 DNA repair and recombination proteins [BR:pput03400]
    L483_25935
Enzymes [BR:pput01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L483_25935
    6.5.1.6  DNA ligase (ATP or NAD+)
     L483_25935
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     L483_25935
DNA replication proteins [BR:pput03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    L483_25935
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     L483_25935
DNA repair and recombination proteins [BR:pput03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     L483_25935
   NER (nucleotide excision repair)
    Other NER factors
     L483_25935
   MMR (mismatch exicision repair)
    Other MMR factors
     L483_25935
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AGN80254
UniProt: R9V5M0
LinkDB All DBs
Position
5481734..5483392
Genome map
AA seq 552 aa AA seqDB search
MKAFATLYLRLDATTSSNAKLEALREYFASAPAADAAWAVYFLAGGRPRQLVPTRLLREQ
AMARAGLPDWLFEESYQAVGDLAETISLLLPIHAEGSDEGLATWVEQYLLPLRGLPPEQA
QQRLQPLWAQLDRPSLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRMVGYTD
ISHRPTPASYEKLIAAESADEHSQRGGLPYPFFLAHPLQAPTEQFDALLGPPSAWQIEWK
WDGIRAQVVKREGQLWVWSRGEELVTDRFPELHSLAQTLPDGVVLDGEILVWKPGDTPAE
LAVQPFALLQQRIGRKTLGKKLLSDAPVVLQAYDLLEWQGEDWRNRPQHERRRQLEQLVQ
DHPLAPVLLSPLLEGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGTWWKWK
IDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDEEMRK
VDAIIRKTTVETFGPVRSVTPTLVFELGFEGIALSKRHKSGIAVRFPRMLRWRLDKPVEE
ADDLATLQALLA
NT seq 1659 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgccacgttgtacctgcgcctggatgcgaccacttccagcaacgccaag
ctagaggcgctgcgcgagtatttcgccagtgctcccgccgcagatgcggcctgggccgtg
tactttctggccggcggacgcccacgccagctggtgcccactcgcctgttgcgcgaacag
gcaatggccagggccgggttaccggactggctcttcgaagaaagttatcaggcagtgggt
gacctggccgaaaccatttcgctgttgttgcccatccacgccgagggcagcgatgaaggc
cttgccacctgggtggagcagtacttgctgcccctgcgcgggctaccaccagagcaggct
caacagcgcctgcagccgctgtgggcgcagctggaccgccccagcctgatgctgtgcctg
aaactgatcactggcagttttcgcgtaggcgtgtccaagctgctggtcacccgtgccctg
gcgcaactggccgggctggacgccaaacgcgtcgcccagcggatggtcggctacaccgat
atcagccaccgccccacgcccgccagctatgaaaagctgattgccgccgagtcggccgat
gaacacagccagcgcggcggcctgccctacccgttcttcctggcgcacccgctgcaagcg
ccaaccgaacagttcgacgcactgctcgggccacctagcgcctggcaaatcgagtggaaa
tgggacggtatccgcgcccaggtggtcaaacgagaaggccagctgtgggtctggtcgcgt
ggtgaggagctggtcactgatcgcttccccgagctgcacagcctggcgcagacgttaccc
gatggcgtcgtgctggatggtgaaatcctggtatggaagccaggcgatacccccgctgaa
ctggcggtacagccctttgctttgctacagcagcgcatcggccgcaagacactgggcaag
aaattgctgagcgatgcaccggtggtactgcaagcctacgacctgctggagtggcaaggc
gaggactggcgcaaccggccgcagcacgaacgccgccggcagctggaacagttggtacaa
gaccacccactggccccggtgctgctttcgcccctgctcgaaggccccgactgggctgac
ctcgcccgccagcgcgagcaatcacgcagcctgggtgtcgagggcctgatgctcaagcag
cgtgaagccctgtacggcgtggggcgcaccaaggacatgggcacctggtggaagtggaag
atcgacccgttcagcgtcgatgccgtgctgatctacgcccagcgcggccacggccggcgg
gccagcctgtacagcgactatacctttgccgtgtgggatgcaccggccggcacaccgggc
cgcgcactggtgccctttgccaaggcctactccggcctcagtgacgaagaaatgcgcaag
gtcgacgccattattcgcaagaccacggtggaaaccttcggcccggtgcgcagcgtgacg
ccgacgctggtgttcgaactgggctttgaaggcatcgctttatcgaagcgccacaaaagc
ggcatcgccgtgcgctttccacgcatgctgcgttggcggctggacaagccggtggaagag
gcggatgacttggcaaccttgcaggcattgctggcctga

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