KEGG   Pseudomonas putida W619: PputW619_2651Help
Entry
PputW619_2651     CDS       T00675                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppw  Pseudomonas putida W619
Pathway
ppw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PputW619_2651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppw03400]
    PputW619_2651
Enzymes [BR:ppw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PputW619_2651
DNA repair and recombination proteins [BR:ppw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PputW619_2651
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ACA73143
UniProt: B1J8U5
LinkDB All DBs
Position
2934643..2937141
Genome map
AA seq 832 aa AA seqDB search
MTAKPLQEYERKRDFNATPEPSGKRGRAKRNHALQFCIQKHDASHLHYDFRLELNGTLKS
WAIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPEGHYGAGDVIVWDRGVWEPEGDANQ
AYAKGKLRFRLQGEKLSGVWNLFRTRLAGKKEQWMLVKSHDAQARSEADYSIVEAQPDSV
ISDRTLVPRRNASAKPAPAPKRKRAGAGKKAALPGLLQPQLATLVDSPPAGDWRYEVKFD
GYRVLARIEGDDVRLFTRNGHDWSHKMPRQVAALRALGLDSAWLDGEMVVNGDNGATDFQ
ALQNAFDTAHDEQIVYYLFDLLFLGGQDLRALPLEDRRKALGKLLEQDQSEVLEFSADFQ
QPVESLLDSACRLELEGLIGKRAGSPYTGRRSADWIKLKCKQRQEFVIVGFTDPKGSRSG
FGALLLALHDPDTGELRYAGKVGTGFSATTLDSIHARLKPLEIGKPALPRPPTGAEARGV
HWLKPKLMAEVSYAQMTRDGVVRHSVFHGLRDDKPASAIDQERAMPAKTVPKAKRAKATE
DLGDLRLTHPDRIIDASIGATKREIAEYYAGVSQWILPQLKDRPVALVRAPEGLNGELFF
QKNAGQLHIANVLSYDKAEAGQAAMVINRPDTLLGAVQMNMLELHTWNATDKDFDKPDRF
VLDLDPDPALPWKAMLDATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKD
FSHAIVNYLAKLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVP
IWREELGHLKGANQWHIGNLHERLAEVDDPWADMSKTRQSITARMRKQMGMT
NT seq 2499 nt NT seq  +upstreamnt  +downstreamnt
atgacggccaagcccctgcaggaatatgagcgcaagcgcgacttcaatgccacacccgag
cccagtggcaagcgcggccgtgcaaaacgtaatcatgccctgcagttctgcattcagaag
cacgacgccagccacctgcattacgacttccgtctggaactgaacggtacgctgaaaagc
tgggccatccccaaggggccctccctggaccccaaggtgcggcgcctggcggtacacgta
gaggatcaccctctcgactacgccgatttcgaaggcaatatcccggagggtcactatggc
gccggcgatgtaatcgtctgggatcgtggcgtctgggaaccagagggtgacgcaaaccag
gcctatgccaagggcaagctgcgctttcgcttgcaaggagagaagctgagcggcgtgtgg
aacctgttccgcacccgtctggcaggcaagaaagagcagtggatgctggtcaagtcccac
gacgctcaggcacgcagcgaggccgactacagcatcgttgaagcgcagcctgacagcgtg
atcagcgatcgcacgctggtgccgcgacgcaatgccagcgccaaaccggcgccggcgccc
aagcgcaagcgggccggtgcgggcaagaaagcggccttgcccggtctactgcagccgcag
cttgcgaccctggtggattccccccccgctggcgactggcgctatgaagtcaagttcgac
ggttatcgcgtgcttgcccggattgaaggcgacgacgtgcggctgttcacccgtaacggc
catgactggagccacaaaatgccacgacaggtggctgcgcttcgcgctttaggtctggac
agcgcctggcttgacggtgagatggtcgtcaacggcgacaacggggcgacggacttccag
gccttacagaatgccttcgacactgcccacgacgagcaaatcgtctattacctgttcgac
ctcctcttcctgggtggccaggacctacgcgcgctgcccttggaggaccggcgcaaagca
ttgggtaaactgcttgagcaggatcagtccgaggttctggagttttccgccgacttccag
caaccggtggagtcgctgctcgacagcgcctgccgcctggagctcgaagggttgatcggc
aagcgcgccggtagcccgtatacaggccggcgcagtgctgactggatcaagctcaagtgc
aaacagcgccaggagtttgtgatcgtcgggttcaccgaccccaaggggagccgcagcggc
ttcggtgcgctgctgctcgccctgcatgacccggacaccggtgagctccgctatgccggc
aaggtcgggaccggcttcagcgccaccacgctcgacagcatccatgcgcgcctcaaaccc
ctggaaatcggcaaacccgccctgccccggccacccaccggggctgaagcccgaggagtt
cattggctcaagccaaaactgatggccgaggtttcttatgcgcaaatgacccgggacggc
gtggttcgccattcggttttccatgggctgcgcgacgacaaacctgccagcgccatcgac
caggagcgtgccatgccagccaagaccgtgccaaaagccaagcgtgccaaagcgacagaa
gacctgggcgacctgcgcctgacgcatccggacaggatcatcgacgccagcattggtgcg
acaaagcgggagattgccgaatactacgccggcgtcagtcagtggatcctgccgcaactc
aaagaccgcccggtggcgctggtacgggcgccggagggcctcaatggcgaactgttcttc
cagaagaacgccggccagttgcatatcgccaatgtgctcagttacgacaaggccgaagcc
ggccaggcggcgatggtcatcaaccgtcctgacacgttgctcggtgccgtgcagatgaac
atgcttgaactgcacacttggaatgccaccgacaaagacttcgacaagcccgaccgcttt
gtgctcgaccttgacccggacccggcattgccctggaaggccatgctcgatgctactcag
ctcgccctcacgttgctcgatgaactgggcctcaaagtgttcctcaagaccagcggtggc
aaaggcatgcacctggtggtgccattgacccgccgtgcgggctgggacgaggttaaagac
ttcagccatgccatcgtcaattacctggccaagctgttccccgaccggctcagcgccgtg
tccgggccaaagaaccgggtcggacggatcttcatcgattacctgcgcaacggtaaaggc
gcgaccaccgcctgtgcctactccctgcgcgcccgggaaggcctgccggtgtcggtgccg
atctggcgcgaggaacttggccacctcaagggcgccaaccagtggcacatcggcaacctg
cacgaacgcttggccgaggtcgatgacccttgggcggacatgagcaagacccgacagtca
atcacagcgcgcatgcgcaaacagatggggatgacatga

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