Cutibacterium avidum: PALO_05220
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Entry
PALO_05220 CDS
T02632
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pra
Cutibacterium avidum
Pathway
pra03030
DNA replication
pra03430
Mismatch repair
pra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PALO_05220 (dnaE)
03430 Mismatch repair
PALO_05220 (dnaE)
03440 Homologous recombination
PALO_05220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pra03032
]
PALO_05220 (dnaE)
03400 DNA repair and recombination proteins [BR:
pra03400
]
PALO_05220 (dnaE)
Enzymes [BR:
pra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PALO_05220 (dnaE)
DNA replication proteins [BR:
pra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PALO_05220 (dnaE)
DNA repair and recombination proteins [BR:
pra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PALO_05220 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGJ77654
LinkDB
All DBs
Position
complement(1150193..1153765)
Genome browser
AA seq
1190 aa
AA seq
DB search
MARSDFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKY
DGDQNPLVKPIIGIEAYVAPSTRMSRVQEFWGISRDAGDPDAEGGKDVSGGGRYTHMTMW
AKDPEGLHNLFRLSSLASYEGYYMKPRMDRELMSKYPGGIIASTGCPSGEVQTRLRLGQF
EEACLAAAAYQDIFGKENYFCELMDHGVPIEKQVRSDLLKLAKRLDIPLLVTNDSHYVTE
DQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSDEMRALFPDHPEACDNTLLLTEMI
GSYDEVFKHVDRMPQFDVPEGETQESWLRKKLQEGMDEKFGPNPPKEVLDRLETELSVIE
PLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHGLLFERFLN
PERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAVKDANRILGYPF
ALGDKITKAMPPDVMGKGVPLGKIFDPSHERYGEGQEFRQLVSDNADVAKVVETAKGLEG
LIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDFLGLRNLG
IMDHCIKIIKENRGIDVDLKELALDDENTYEMLARGDTLGVFQLDGTAMRSLLRLMGPTC
FDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPTYHLIVYQE
QIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDAIQTLWDVM
VPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMYLADMRSQH
INVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPATDFFSFLDQV
SLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKRHQANGQDDLFGMGDD
SEPTQLGVERVVPEDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDISVAELVNP
EGHHEGRYTIAGMVTQIVRRTTKNGDIWASITLEDLGASITIACFPKVYQRVEPLLAVDS
ILKVRGFIRERDETVEMSANDVWLLDLTDAGNAPMTIDLRRGRCNRGTIEGLRGVLRNHP
GSSEVRLRLLDGKVTTTFRLADELKVTTGQPLMADLKALLGPSCIPRRQS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatccgacttcgtccaccttcatactcacactgagtactcgatgctggatggt
gctgccagcaacgagaagctttttgccgaggtggctcgtcagggcatgccggcggtcgcc
atgaccgaccacggcaacatgttcggtgcctatgagttcttccagatctccaagaagtac
gacggagaccagaatccgctggtcaagccgatcatcggcatcgaggcctatgtcgctccg
agtacgcgcatgtcccgggtacaggaattctggggaatctcccgtgacgcaggcgatccg
gatgccgagggtggcaaggacgtctccgggggtgggcgctacacccacatgacgatgtgg
gccaaggacccggaggggcttcacaacctgttccggttgtcctccctggcctcctatgag
ggctactacatgaagccccgcatggatcgcgaactgatgtccaagtatcccggtggcatc
attgcctccaccggatgcccgtcgggtgaggtgcagacccgactgcgcctgggccagttc
gaggaagcctgcctggccgcggctgcctaccaggacatcttcggcaaggagaactacttc
tgcgagttgatggaccatggtgtcccgatcgagaagcaggtgcgttccgacctgctgaag
ctggccaagaggctggacattccgcttctggtcaccaatgactcgcactacgtcaccgag
gaccaggctgacgcccacgactccctgctctgcgtgggcgtgggtcgtaacaaggatgat
ccgaaccgcttccgtttcaacggctcgggctactacatcaaatcttctgacgagatgcgg
gcgctgttccccgaccatcccgaggcctgcgacaacaccctgctgttgaccgagatgatc
gggtcttacgatgaggtcttcaagcacgtcgaccggatgccgcagttcgacgtcccggag
ggggagactcaggagtcctggttacgcaagaagcttcaggagggcatggatgagaagttc
ggtccgaatccgcccaaggaggtcctcgaccgtctcgagacggagctctcggtcatcgag
ccgctgggattctcttcctacttcctcgtcgtctccgacatatgcaatgcggcgcgctcc
atgggcgtgccggtcgggccgggtcgtggatcggctgccggttccctcgtcgcctatctg
acgggcatcatcgccatcaatccgctggaacacggactgctgttcgagaggttcctcaac
cccgaacgtgtgaacccgcccgacatcgacctcgacttcgacgaccgccagcgtgacaag
gtcatcgattacgtcacccacaagtacggggcggagtacaccagccaggtcaacaccttc
ggcaagatcaaggccaaggctgccgtcaaggatgccaaccgtattctcggctacccattc
gctctcggcgacaagatcaccaaggcgatgcccccggatgtcatgggcaagggagttccg
ctgggcaagatcttcgatccgtcccatgagaggtacggcgagggccaggaattccgccag
ttggtttctgacaacgccgacgtcgccaaggtcgtcgagacggcgaagggcctcgagggg
ttgattcgcggaactggtgtgcacgcatgtgccttcatcctgtccagcgctccgctgctc
gacctggtgccgatgcacaagcgcgacaaggacggcatgatcatcgccggcttcgcctac
ccccagctcgaggagatggggctcatgaagatggacttcttgggcctgcgaaacctcggc
atcatggatcattgcatcaagatcatcaaggagaaccgggggatcgacgtcgatctcaag
gagcttgcccttgatgacgagaacacctacgagatgctggcccgaggcgacaccctgggc
gtcttccagctcgatggcacggccatgcgatccctgctgcgtctcatgggaccaacctgc
ttcgatgacatcgttgccgtgttggccctgtaccgaccaggcccgatgggtgccaatgcg
cacatctcatatgcccagcgcaagaacaaccgagaaccgatcatcccgatccatcccgaa
ctcaaggaggacctcgacgagatccttgctcccacgtaccacctcatcgtgtaccaggag
cagatcatgtcgatcgcccggaagctcgctggctacaccctgggtggcgcggaccttctg
cgtcgtgccatgggcaagaagaagaagcacatcctggaggagaacttcatccccttccag
gctggcatgcgtgaacacgggtactccgacgacgccatccagaccctgtgggacgtcatg
gtccccttcgccggatacgccttcaacaagtctcacgctgccggttatggactggtctcc
tactggacggcctatctcaaggccaactacccggccgagtacggagctgccctgctgacc
agtgtcggtgacgacaaggacaagatggcgatgtacctggccgacatgcggtcccagcac
atcaatgtcctgcctcccgacgtcaacgcctcctcgctggagttcaccgctgtcggtgag
gacatcagattcggcctgggagctgtccgcaatgtcggtgccaacgccgtcgcggagatc
attcgggcccgtgaggagaacggcccggccactgatttcttcagcttccttgaccaggtc
agcctgacggtgtgcaacaagaggctcatcgagtccctcatcaaggctggcgccttcgac
tccatgggccattcccgacgcggcctgatggcggtctacgagcaggcggtcgatgccgtc
atcgacatcaaacgccaccaggccaatggtcaggatgacctcttcggcatgggggacgac
tcggaacccacccagctgggtgtcgagcgggtcgttccggaggacgactgggaccgcagt
accaagctcgccttcgagcgtgagatgttgggtctgtacgtctccgatcacccgctgcga
ggcctggaagctgctctggaggccgaatcagacatctcggtggccgaactcgtcaaccct
gaaggccatcatgaggggcgctacaccatcgccggtatggtcactcagatcgtccgacgt
accaccaagaacggtgacatctgggcctctatcacgctggaggacctcggcgcctccatc
actattgcctgtttcccgaaggtgtaccagcgcgtggagccgctactggccgtcgacagc
atcctcaaggtgcgcggattcatcagggaacgtgacgagaccgtcgagatgtcagccaat
gacgtctggctgctggacctcaccgatgccggcaatgcccccatgacgattgatctacgt
cgcggacgatgcaaccggggcaccatcgagggcctgcggggagtgctgcgcaaccacccg
ggtagctccgaggtgagactgcgactcctcgacggaaaggtgacgaccaccttccggctt
gccgatgaactcaaagtcaccactggccagccgctaatggccgacctcaaggccctgctc
ggcccctcatgcatccccaggaggcagtcatga
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