Pieris rapae (cabbage white): 111000641
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Entry
111000641 CDS
T05162
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
Organism
prap
Pieris rapae (cabbage white)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111000641
NCBI-ProteinID:
XP_022125861
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Position
5:complement(555073..571677)
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AA seq
706 aa
AA seq
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MGLRLAFLFIVIIHFTSCLENTTDTSTTSPLNTLLCSGRLPGDVDFQTVDLIAVYRLDRP
DTTGITLVQGSQNLQRAYRIGDGASLTLPVRKVFPNGLPEQFSITATFNPRNQRRPWSLI
RVRSQNLLFSLTLLPHVRKMAVFVQKTRVIFSCPELFRVGWHKVHVTITNDTVYAAVDCI
ELEPEDIQSHSFNNATTVTIVSNDDGTPAPIDLQWLSLSCNQFNLTEESCEEIEIAEPLI
ESPMTGAQSSPNVNPFFAPVCNASCPPGPQGPQGQKGDQGVPGYTGLPGVRGLQGLPGAL
GPPGPKGDRGDRGPPGNSTNVAMLPGPPGEPGRRGIKGDRGNTGQKGEPGEVGLVGLAGV
PGSDGKDGLPGPPGAMGPRGDRGYPGPPGPVAHVNTSIVQGSKGEKGSPGRPGRDGEMGP
RGLSGIDGHDGVPGAQGPPGLPGNPGERGFPGLQGLAGERGPEGPQGPEGRQGAPGPQGP
PGLTTTSGVSMPGLPGPQGERGEKGEGGLPGIPGRDGLDGIPGSPGPRGAPGPIAPRDII
VEHQSLTEGDVRNICEDLMRDRLKELADSLVMIPPAVSVGRRGPIGRPGPPGPPGIPGET
GVMGHRGYPGETGEPGRPGEPGSRGEKGDKGDRGPEGVGILGPEGPRGLPGPVGPAGPEG
RQGERGSPGREGAIGPRGVPGPRGSCDCPLASYYAYPQTIGNVKGP
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggacttcgattggcatttcttttcatcgtcataatacattttacaagctgtttggag
aacaccacagacaccagcactacatcaccattaaatactctactctgttctggaagacta
cccggggacgtagatttccagacagtagacctgatagcagtgtaccgcttggatcgacct
gataccacgggaattaccttggtacagggttcacagaatttacaaagagcgtacaggatt
ggagatggggcaagcctgacattacccgtgaggaaagtttttcccaacggtttaccagag
cagttcagcatcacagctacgtttaaccctcggaaccaacgcagaccttggagcctcata
cgagtgcgatcacagaatcttctcttctccctgacactgctacctcatgtacgaaaaatg
gccgttttcgttcagaaaacaagggttatcttttcttgtccagaattatttcgtgttgga
tggcacaaagtacatgttaccatcactaatgatactgtatacgccgcagtggattgcatc
gagttagaaccagaggatatccaatcacacagtttcaataatgccacaacggtgacgata
gtatcaaacgacgatggaaccccagctccgatagacctgcagtggctgtctctgagttgc
aaccagtttaatcttactgaggaaagctgtgaggagattgaaatagccgagccgctgata
gagtcacctatgaccggcgcgcagtcttcaccaaatgtgaatccattttttgctccagtg
tgtaatgcttcgtgtccaccaggcccccagggcccccaaggccagaaaggtgatcaagga
gtcccaggctacacgggtcttccgggtgttcgaggcttacaggggctacctggggctctt
gggcccccaggtcctaaaggagacaggggtgatcgaggaccacccggaaatagcactaat
gtagcaatgttgccagggcctccaggggaacctgggcgaagaggaatcaaaggagataga
ggaaatacgggtcagaagggcgaaccaggagaagtgggtctagttggtttggctggggtg
cccggatctgatggaaaggatggattaccagggcctcctggagcaatgggaccacgtggt
gacagaggatatccaggtcctccagggcccgttgctcacgtaaatacttccatcgtacaa
ggcagtaagggtgaaaaaggatctcctggcaggccaggacgtgatggagaaatggggcct
cgagggctgtccggaatagacggacatgatggagtacctggagctcaagggcctcctggt
ttgcctgggaatccaggagaacgaggttttccgggattacagggccttgctggagagaga
gggcccgaaggcccacagggccctgaaggtcgccagggcgccccgggtccccaaggtcct
ccaggcttaacaacaacttctggagtcagtatgcctggtctacctggacctcagggggaa
agaggagagaaaggtgaaggaggcttaccaggaataccaggcagggacggactggatggt
ataccaggctctccgggaccgagaggtgccccaggccctattgcacctagagatattatt
gttgagcatcaatcactcacagaaggggacgtaagaaatatttgtgaagatttaatgaga
gatcgcttaaaagaattagcagatagtttagtaatgattcctccagcagtcagtgttggg
agacgggggccgattggaagacctgggccacctgggcccccaggaataccaggggaaaca
ggtgtcatgggtcacagaggatatcctggtgagactggagagccgggtagaccgggagaa
ccaggctctagaggggagaaaggagataaaggagacagaggccctgaaggagtagggatt
ctggggcccgagggtcctagaggattaccaggtccagtaggtcccgctgggcctgaagga
aggcaaggtgaacgaggaagccctgggcgagaaggtgccattggcccccgcggtgtgcca
ggtcctagaggaagctgtgattgtcccctcgcatcgtactacgcttatccacagactata
ggcaatgttaaaggaccatag
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