KEGG   Pieris rapae (cabbage white): 111001863Help
Entry
111001863         CDS       T05162                                 

Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
prap  Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:prap00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:prap01009]
    111001863
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prap03019]
    111001863
   04131 Membrane trafficking [BR:prap04131]
    111001863
   03036 Chromosome and associated proteins [BR:prap03036]
    111001863
Enzymes [BR:prap01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111001863
Protein phosphatases and associated proteins [BR:prap01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     111001863
Messenger RNA biogenesis [BR:prap03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     111001863
Membrane trafficking [BR:prap04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    111001863
Chromosome and associated proteins [BR:prap03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     111001863
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 111001863
NCBI-ProteinID: XP_022127595
LinkDB All DBs
Position
Unknown
AA seq 1073 aa AA seqDB search
MSSASLPTVAGRESGGDAKKTQPPSSIVTRNGARKAKIQTRARTAGTAKPSASLVAAKRK
ALQKKKTTVETVLMDPYQIAMDANRKVKGPTGFVTEPRMVEHKCLWDDNYPENPMRLISV
INRCHELNLIEQCTEINPEAASKEEILNLHDVSVYSMMEKTHQNNDLEYLEDISSCYDSV
YIHPSTHELALIAAGSTIKLVDHIIKGDIQNGAAFVRPPGHHAMKAEPCGYCIYNNVALA
AKHALQHGLSRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHGSFWPNLRQSNFDYI
GEGKGAGFNFNVPLNQIGMKDADYLAIWYQLLLPMAFEYQPELILISAGYDAAIGCPEGE
MLITPACYATLTHLLMGVCSRIAVVLEGGYCPTSLAEGAALTLRTLLGHPPPMGEALTEP
TDSIQESILNCIYAHKNYWKCFYQPTYSMYSDVKNVCDIDKDKHTVIVKWEGDETRPEKY
PTRNCYPLQSIETKRNIADRLRQLQLATDLTPPQYPVCYIYDEAMLKHKNICEPGHVECP
QRIMRVHERHMDFGLIDRVHLLTARRATDEDILAVHSEKHLTRLKELSSMKLRELNNSKD
TYDSVYFHPDSLESATTAAGCVLQMVDSVLSGQAGSGVCVVRPPGHHADKSTPCGFCLIN
NVAIAAQYALKRVKRVLILDWDVHHGNGTQSITLDNEQILYISLHRYDNGSFFPQSRDAD
HTVVGTGKGEGFNVNIPWNKRGMGDAEYIAAFTQVVMPIAREYHPDLVLISAGYDACFGD
PIGGCKVSPECYGVMTHMLRSLAGGRVILCLEGGYNITSTSFAMAMCTKALLGDPIYTHY
DPKASCNWSAIESINDVIKVQKKYWKNLKFQLALPIENVLEKVSPKSTLEDGLANLTIHC
TDGIHCGTDDEAEGSSKNIDSGSKDQSLKPDSSKPKTLVDFLSENMQAIVDGEMFAVVPL
PGCPHLDSLYAIPSDVKFQQGVKCTDCDHTIENWVCLHCYITACGRHINGHMAAHYSTTQ
HPLSLSLADLSVWCYPCDAYIDNPLLYDAKNNAHKCKFGEEMPWTYKDGIHMG
NT seq 3222 nt NT seq  +upstreamnt  +downstreamnt
atgtcttcagcttcactgccaacagtagctggacgcgagtcaggtggagatgctaagaag
acacaaccaccatctagcattgttacccgcaatggtgcaagaaaagctaaaatacaaaca
cgtgcccgtacagccggtactgcgaaaccttcagcatctcttgtggctgcaaagcggaaa
gcactgcagaagaagaaaacaacagtagagacggttttaatggatccttatcaaatagca
atggatgcaaacagaaaagtaaaaggtcctactggttttgttactgagccacgtatggta
gaacataagtgtttgtgggatgacaactatccagaaaatccaatgcgactcataagtgtc
attaatagatgccatgagttaaatttaatagaacagtgtactgaaataaatcccgaggct
gcatcaaaagaagaaattttaaatttacatgacgtatctgtttattctatgatggagaaa
actcaccagaacaatgatcttgaatatttagaagatatatcatcgtgttatgactctgtt
tacatacacccaagtactcatgagctggctctcatagcagcgggttctacaataaaactg
gttgatcacataataaaaggggatatacagaatggagcagcatttgttaggcctccggga
caccatgccatgaaggcagagccttgcggttattgtatatacaacaatgtggcacttgct
gctaaacatgcacttcaacacggacttagtagaatactaattgtggactgggatgtacac
cacggccaagcaacacaacaaatgttttataacgatccaagggtcgtatatttctcgata
catcgctatgagcacggatcgttttggcccaatttgcgtcaatccaatttcgactacatc
ggcgaaggaaagggggcgggttttaacttcaatgtacccctgaatcaaatcgggatgaaa
gatgccgactaccttgctatatggtaccagttacttcttccgatggcttttgagtaccaa
ccggagctgatcctgatatcggcgggttacgacgctgcgatcggatgtccggagggtgag
atgctgataacaccagcgtgttatgctacattgacgcatttgctcatgggcgtgtgttcc
cgaatagcagtcgtgttagaagggggctattgccctacgtctttagcagaaggagctgcc
ttaactttacgaacgctgctaggtcacccgcctcccatgggcgaagctcttactgagccc
acggactcaattcaagaatcaatcttaaactgcatttacgcgcacaaaaattattggaag
tgtttctaccaacccacatatagcatgtactcggatgtaaaaaacgtatgcgacatcgac
aaagacaaacatactgttatagtgaagtgggagggagacgagactagaccagagaaatac
ccaacaagaaattgttatccattacaaagtattgaaacgaaaaggaatattgcagataga
ttaagacagttgcagttagcaactgatttaacgccgccccagtatccagtgtgctatata
tatgatgaggccatgttgaaacacaaaaatatttgtgaaccgggtcacgtagaatgtccc
caaagaattatgcgtgtccacgaacgacatatggactttggtctgatagatcgtgtgcat
ttgctgacggcgagacgcgccaccgatgaagacatactcgcagtgcattcggagaaacat
ctaaccagattgaaagaattgtcatcgatgaagcttcgagagctgaacaattcaaaggac
acatacgattctgtgtatttccatcctgattcgctggagagtgctactacggcagctgga
tgtgttttgcagatggttgattcggtactatccgggcaagccggttccggggtatgcgtg
gtccgtccacccgggcatcatgcggataaaagcactccctgtggcttctgtctcatcaac
aatgtggccatcgcagcacaatacgccttaaaacgcgtaaaacgtgtgttaatactcgat
tgggacgtgcaccatggaaatgggacgcagagtattacgttggacaacgaacagatatta
tacatttccctacatcgctacgacaatggttcgttctttccgcaatcacgtgatgctgat
catacagtggttggaactgggaaaggggaaggattcaacgttaacataccctggaataag
cgcggtatgggcgacgcagaatatatagcggcgttcacgcaagtcgttatgccgatagcg
agagagtaccatcccgatcttgtgctcatatcagccggctatgatgcctgctttggagat
ccaatcggaggttgcaaagtatcaccagaatgctacggagtaatgactcacatgctcaga
agtttagctggtggccgtgtcatactttgtctggaaggtggttataacataaccagtacc
tcgtttgctatggctatgtgtaccaaagctcttctaggcgaccctatttacacacattac
gatccaaaagcaagttgcaactggtcagccattgaatctataaacgacgtcatcaaagta
cagaaaaagtattggaaaaacctaaagtttcaactggctttaccaatcgaaaatgttcta
gaaaaggtctcaccgaaatcgacgttagaagatgggctagccaatttaactatacattgc
actgacggtatacactgcggtaccgatgatgaggccgagggtagttcaaaaaatatagat
tccggctcgaaggaccaaagtctaaaacctgatagttccaaacctaagacgttagtagat
tttttatcggagaatatgcaagctatagttgatggagaaatgtttgctgtggtaccttta
ccgggatgtccccatttggattcattgtacgcaataccaagtgatgtgaagtttcaacaa
ggcgttaaatgtactgactgtgatcatactattgaaaattgggtctgtcttcattgttat
attacggcttgcggtcgacatataaacggccatatggcagcgcactattctaccacacaa
catcctctatctctttctctcgctgacctctcggtatggtgctatccctgtgatgcatat
attgacaatccattgctttatgacgccaagaataacgcgcacaaatgcaaatttggtgaa
gaaatgccctggacctataaggacggtatccatatgggttaa

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