KEGG   Pseudomonas rhizosphaerae: LT40_12535Help
Entry
LT40_12535        CDS       T03339                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
prh  Pseudomonas rhizosphaerae
Pathway
prh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:prh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LT40_12535 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:prh03400]
    LT40_12535 (ligD)
Enzymes [BR:prh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LT40_12535 (ligD)
DNA repair and recombination proteins [BR:prh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LT40_12535 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AIS18166
UniProt: A0A089ZQT0
LinkDB All DBs
Position
2767067..2769655
Genome map
AA seq 862 aa AA seqDB search
MTKALEEYNRKRDFDATSEPSGTARVGKRGKATKALQFCIQKHDASHLHYDFRLELDGTL
KSWAVPKGPSLDPQARRLAVHVEDHPLDYASFEGNIPDGHYGAGDVIVWDRGIWIPEGDP
RQAYEKGKLKFVLQGEKLSGTWNLVKTHMPGKREQWFLIKSKDDAARPLAEYDVLVAEPD
SVISERTLVPRKRATKAAAKPVNKPAAKPTPKRAKGKGIQLEGAKAADLPATLKPELATL
VDSAPEGDWCYEIKFDGYRIVARIDGDQVSLFTRNGHDWTAKMPRQAKALADLGLQSAWL
DGEVVVANEEGVPDFQALQNAFEDERSDKIVFYLFDLPYLNGMDLRAVPLEQRRGALAKV
LETNTEDALKFSDDLAGSAESLLDSACQMNMEGLIGKRVGSPYVSRRSSDWIKLKCKRRQ
EFVIAGYTEPKGSRSGFGALLLGLHDADSGELRFAGKVGTGFSESTLRTLLAQLQALETD
RPALANPPKGAQARGVHWLKPTLLAEVAYAEMTRDGAVRHAVFHGLRTDKLAKEITSEMP
AAKSSTSAKPAGKPAKKPRKAATKADDADLVGQVRITHPERVINASSGTTKMQLAEYYGR
ISPWLLPHLKQRPVALVRAPDGVGGELFFQKHAGHLAIPHILTFDKEQAGQAAMVINDGQ
ALLGAVQMGTVELHTWNATTKDFQHPDRFVLDLDPDPALPWKSMVEATQLTQTLLDELGL
ASFLKTSGGKGMHVVVPITRKLGWDEVKAFSRAVVEHMAKLMPERFTAVSGPKNRVGRIF
IDYLRNGLGATTACAYAARARDGLPVSVPVTREEVAQIKGGDQWDIDSVLERLAELEEDP
WADFFSTRQSITVAMRKKLGLK
NT seq 2589 nt NT seq  +upstreamnt  +downstreamnt
atgaccaaggctctggaggaatacaaccgcaagcgtgacttcgacgccacctcggagcct
tctggcaccgcacgcgtcggcaagcgcggcaaggccacgaaggccctacagttttgcatt
cagaagcatgatgccagccacctgcactatgatttccgcctggaactcgacggcaccctc
aagagctgggcggtgccgaagggtccctcgctcgacccccaggctcggcggctggccgtg
catgtcgaggaccatccgctggactatgcgagcttcgagggcaacattcccgacgggcac
tacggcgccggtgacgtcattgtctgggatcgtggtatctggattcccgaaggcgatcct
cgccaggcctatgaaaaaggcaagctcaagttcgtcctgcagggcgagaagctgagcggc
acctggaacctggtcaagactcacatgcccggcaagcgtgagcagtggtttctgatcaaa
tccaaggacgatgccgcacgcccgttggccgagtacgacgtgctcgtcgccgaacccgac
agcgtcatcagcgaacgcaccctggtgccgcgcaagcgcgccacgaaagccgccgcgaaa
ccggtgaacaaacctgcagccaagcccacgcccaagcgcgcaaaaggcaaaggcatccaa
ctggaaggcgccaaggcggctgacttgcctgccactttgaaacccgaactggcaaccttg
gtggacagcgcgcccgaaggcgactggtgctacgagatcaagttcgacggctaccgcatc
gtcgctcgcatcgacggcgatcaggtcagcctgttcacccgcaacggccacgactggacc
gcgaagatgccgcgccaggccaaagcactggctgacctgggtttgcagtcggcatggctg
gacggcgaagtggtagtggccaacgaagagggcgtaccggatttccaggccttgcagaat
gcgttcgaagacgagcgcagtgacaagatcgtgttctacctgttcgatctgccctacctc
aacggcatggacctgcgcgccgtgcctttggagcaacgtcgcggtgccttggccaaggtg
ttggaaaccaacacggaggacgcgctgaagttctccgacgacctcgcaggttcggctgaa
tcgctgctcgacagcgcttgccagatgaacatggaaggcctgatcggcaagcgtgtcggc
agcccttatgtctcgcggcgcagcagcgactggatcaagctcaagtgcaaacgccggcag
gagttcgtcatcgcaggctacaccgagcccaagggcagccgcagtggcttcggcgccctg
ttgctgggcttgcatgatgccgacagtggcgagttgcgcttcgccggcaaggtcggtacc
ggcttcagcgaatccaccttgcgcaccctgctcgcccagctgcaggcactggaaaccgac
cgcccggcgctcgccaatccgcccaagggcgcccaggcccgtggcgtgcattggctcaag
cccacgctgttggcggaagtggcctatgccgaaatgacccgcgacggcgctgtccgccac
gcggttttccacggcttgcgcaccgacaagctcgccaaggagatcacgtccgaaatgcca
gcggccaaatccagcacgtccgccaaaccggcaggcaagccagcaaagaagccgcgcaag
gcagccaccaaggccgacgacgccgacctggtcgggcaggtgcgcattacccatccggag
cgggtgatcaatgcctccagcggtaccaccaagatgcagctggccgaatactacggacgc
atttcaccctggttgctaccgcatctgaaacagcgtcccgtggcgctggtacgggcgccc
gacggggtgggcggcgagctgtttttccagaagcacgccggccacctggcgatcccgcac
atccttactttcgacaaggaacaggcaggccaggccgccatggtcatcaacgatggtcag
gcactgctgggcgcggtgcaaatgggcaccgtggaactgcacacctggaacgcaaccacc
aaggattttcagcaccccgaccggttcgtgctcgacctcgacccggatccagccctgccc
tggaaaagcatggtcgaagccacccaactgacgcagaccctgctcgacgaactgggcctt
gcatcgtttctcaaaaccagcggcggcaagggtatgcacgtggtggtgccgattacccgc
aagctaggctgggacgaggtcaaagcgttcagccgcgccgtggtcgaacacatggccaag
ctgatgccggagcgcttcacggctgtctccggcccgaaaaaccgggtcggccggatcttc
atcgactacctgcgcaacggtctgggcgcgaccaccgcctgcgcctatgcggcgcgggct
cgggatggcttgccggtgtcggtgccggttacccgggaggaagtggcccagatcaagggt
ggtgatcagtgggacatcgacagcgtgctcgaacgcctcgccgagctggaagaagatccc
tgggcagatttcttcagcactcgccagagcatcaccgtcgccatgcgcaagaagctcggg
ctcaaatga

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