Paenibacillus riograndensis: PRIO_2463
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Entry
PRIO_2463 CDS
T03849
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRIO_2463 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pri03019
]
PRIO_2463 (dbpA)
03009 Ribosome biogenesis [BR:
pri03009
]
PRIO_2463 (dbpA)
Enzymes [BR:
pri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PRIO_2463 (dbpA)
Messenger RNA biogenesis [BR:
pri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRIO_2463 (dbpA)
Ribosome biogenesis [BR:
pri03009
]
Prokaryotic type
rRNA helicases
PRIO_2463 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CQR54869
UniProt:
A0A0E4HAA7
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All DBs
Position
I:3011276..3012715
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AA seq
479 aa
AA seq
DB search
MSVFRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPL
CELADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQK
THIVVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTML
FSATLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENP
DSCIIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVA
ARGIDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIG
FSLPVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVD
FVGTIAKLEGITADDIGIITIQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtatttagagattacgggttaaatgaagagattatccgcgcgctggatgtactg
aattatctggagcctacagaggtgcagagcatggtcattcctgcggcactgaagggccag
gatctcatcgtcaagtcacagaccggcagcggcaaaaccgcatcgttcgccatcccgctc
tgtgaactggcagactgggcggagaacaagccgcaagcgttggtgctgacaccaacccgc
gagctggctgcacaggttaaggaagacatcacgaacatcgggcgcttcaagcggattaag
gcagttgcgttattcggcaagcagccgtttgccccgcaaaaaaccgagcttgcccaaaaa
acgcatatcgtcgtaggcacaccgggacgtgtgttcgaccatatcgggcgcggcacgctg
ccgctcagccggattagatatctggtgattgatgaagcggatgagatgctgagcatggga
tttatcgagcagattgaacagattatcgagaagctgccccgtgagcgcatgacgatgctg
ttctccgcgacgctgccggatgccgtgaagagcctgtgcctgaagtatatgcgtggaccg
gtggacattgagatcgaagccagcggcattacgacggcggcaattgagcatgccctgatt
gaagtcagacaagccgcgaagtttgggctgctgcttgacgtgctggcagtggagaatccg
gacagctgcattattttttgccggacgcaggagcaggtgaacgagctgttccgcagtatg
gcggacctggagtatccggtggataaaatccacggcgggatgatgcaggacgagcggttt
gaggtcatgaacgcttttaaaagaggccggttccgctatctgatcgccaccgatgtagcc
gctcgcgggattgatattgagaacatcacccatgtgatcaattacgatattccgatggaa
aaagagagctacgtgcaccgtaccggacgcaccgcacgcgcaggcaaaagcggcaaagcc
atcaccttcgccacaccggacgaacacaagtgggtcggggaaattgagcgctatatcgga
ttcagcctcccggtgatgaaagctccttcggaggatgctgtggccgatgccaagcctgcg
tttgaagcaaagctgggcaagcagcaggtccgcaagaagggcaagactgaggtcatgaac
gaggacatcgtgaagctgtattttaacgggggcaaaaaaaagaagctgagagccgtcgat
ttcgtcggcaccattgcgaagctggaagggatcaccgctgacgacatcgggatcatcacg
atccaggacaatgttacttatgtcgatatcctgaacggcaaaggcgcgcaggtgctgcag
gcgatgaaggacaccacagtgaagggcaagctgctgaaggtgcatgtcgcgaagaagtag
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