Prosthecochloris sp. CIB 2401: Ptc2401_01564
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Entry
Ptc2401_01564 CDS
T04424
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
proc
Prosthecochloris sp. CIB 2401
Pathway
proc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
proc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ptc2401_01564 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proc03400
]
Ptc2401_01564 (mfd)
Enzymes [BR:
proc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ptc2401_01564 (mfd)
DNA repair and recombination proteins [BR:
proc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ptc2401_01564 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
BAHCC1-like_Tudor
RecG_dom3_C
AAA_16
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ANT65309
UniProt:
A0A1B1Q390
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All DBs
Position
1577149..1580445
Genome browser
AA seq
1098 aa
AA seq
DB search
MISTEQSTNIETGISATKRTLDYLRKAIASSSPSTSLQQRVTALENTGSISISGIQGSLA
SLVVAELSSTLQRPVIIIGNQEALDIYDNDLKLLLDPGSVTSVADELSPSLCRLKHARQG
IILAEPDDFRTALKNPDILDSRLFQLQVDDEPGYSNLIGFLEENGFKRKEFVHDEGDYST
RGSIIDIYPFGADDALRIEFFGDTVTSVRTFDINSQRSKSTISSYPLAGNFLQNAQEDEQ
ESWHLADYISSNTVIFIDNELMFAAGEQGQELSSTLEAYATIAINRHGKGDIDFASTPQE
NTNANFSLLAARLSEDSSRNLPVIFVGSSKKEVDELSEFITDEIHSAHKGSEPLPALNWI
PANLYAGFRFENCSVYSESDIFGKLHQHKKKRRKAVRGISLKDLHRLKVGDYIVHEDYGV
GIFKAMETIEAGDSEQECVLIEYDKGDQLYVNVQNIRLLSKYSASEGSSPTLSRLGSSKW
SAKKEKVKNRLKDIASELIKLYAKRKMTPGFAFGQDSIFQREFEAAFIFTETPDQLKAIE
DVKKDMQDPSPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTTILAHQHLETFR
RRFANFPVTIEILSRFVPRKEQKRIIDNISKGLVDIVIGTHRLVSKDVLFQDLGLLVIDE
EQHFGVTVKEKLRTSFPGVDTLTMSATPIPRTLQFSMLGARDISIVSTPPRNRQPVETVI
TPYDPELVRTAIEHELSRNGQVFVLHNRISGLDEFMHKLHELVPSARMATAHGQMPGSEL
ENIMMDFISHELDVLISTSIIGSGLDISNANTIIINRADMFGLADLYQLRGRVGRSDRKA
YSYLITPPMQTLKEDAIQRLAVIESFTELGSGFTIAMRDLDIRGAGNLLGAEQSGAIHEL
GFSLYQKLLEEAVAELKSGVFSSLFAQEGQAASMHERNCDLSFFFDALIPDYYISSAQER
FAFYERISKAATSKALNDIEAELKDRFGQLPEEVRNLLHLSGFKQNCQSLGLQKIDLQPE
TCAFTLPGQDDEEFYRSRFFQNLIGSVQQEWMQVYAPRFREGRHMKLTLHHPAGTDTSPT
ELMATYSSLIRELERKED
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgatatcgaccgaacagagcactaatatagagaccggcatatcggcaaccaagagaaca
ctcgactatctccgcaaggccattgcatcatccagcccaagcacatccctgcaacagcgc
gtgacagcccttgaaaacaccggttcgatatcgatttccggcatacagggctcgctggca
tctctcgtagtcgctgaactctccagcaccctccagcgaccagtaatcatcattggtaac
caggaagccctcgacatttacgacaacgacctcaagctcctgctcgaccctgggagcgtc
acctcggtagctgatgaactctccccctccctctgtaggctgaaacatgccaggcaaggc
atcatacttgccgaacccgacgatttccgcactgcactcaaaaaccccgacatccttgac
tcaaggctcttccagctgcaggtagacgacgaacccggctatagcaacctcatcggtttc
cttgaagaaaacggcttcaaacgcaaggaattcgtgcacgatgaaggtgattattcaacc
aggggctccataatagacatctatccctttggcgccgacgatgcactaagaatcgagttc
ttcggtgacaccgtcacctccgtcagaaccttcgacatcaacagccagcgttcgaaatca
acgatcagctcctacccgctggctggaaacttcctgcaaaacgcacaggaggatgaacag
gaaagctggcaccttgcagattacatctcttcgaataccgtcatcttcattgacaacgaa
ctcatgttcgcggccggcgagcagggccaggagctctccagtaccctggaggcgtacgca
acaattgccatcaacaggcacggcaaaggagatattgacttcgcatcgacaccgcaggaa
aataccaacgccaacttttcactgcttgctgcaaggctttcagaagacagttcgaggaac
ctccctgtcatctttgtcggcagctctaaaaaagaagtggatgaactttccgaattcatc
accgatgaaatccactctgcacacaagggctcggaaccacttccagctctgaactggatt
ccagcgaacctttacgcaggcttccgtttcgaaaactgcagcgtctacagtgaatcggat
attttcggcaaactgcaccagcacaagaaaaaacgcaggaaagccgtccggggaatctcc
ctcaaggatctgcaccgactcaaggtcggggactacatcgtacacgaagattacggtgtc
ggcatcttcaaggcaatggaaaccattgaagccggtgactccgaacaggaatgcgtgctt
atagaatatgacaagggcgaccagctctacgtcaacgtgcagaatatccgcctgctgtcg
aaatacagtgcttccgaaggctcatcaccaaccctttccaggctgggcagttcaaaatgg
agtgcaaaaaaagaaaaggtcaaaaaccggctgaaagatatcgcctcggaactgatcaaa
ctctacgccaagcgaaagatgacgccgggcttcgcgtttggccaggactcgatattccag
agggaattcgaagccgcttttattttcaccgaaacccccgatcagctcaaagccatagag
gacgtcaaaaaagacatgcaggatccctctcccatggacaggctgatatgcggcgatgcc
gggttcggcaaaaccgagattgccatgcgggcagcattcaaggctgtcgaatcaaaaaaa
caggtagcgatactcaccccaactaccatccttgcacaccagcacctggaaacattccgg
cgtagattcgccaactttccggtcactatcgaaatcctcagccgtttcgttccccgcaag
gaacagaagcgcatcatcgacaacatctcaaaaggacttgtggacatcgtgatcggcacc
cacaggcttgtctcgaaagacgtactcttccaggacctgggtctgctcgtcatcgatgaa
gagcagcatttcggtgtcacggtcaaggaaaagctccggacaagcttccccggggtagac
accctcaccatgtcagccacaccgattccccggacactccagttttccatgctcggcgcg
cgtgacatttccatagtctccacccctccccgaaaccgccaaccggtcgaaacggtcatc
actccatacgatcctgaacttgtcaggacggcaatagagcatgaactcagccgtaacggc
caggtttttgtgctccataaccggatttcaggtcttgatgagtttatgcacaagctgcac
gaactcgtccccagtgccagaatggctaccgcacacggccagatgcctggatccgagctg
gaaaatatcatgatggacttcatcagccatgaactcgatgtacttatctcgacatcgatc
atcggctccgggctcgatatctcgaatgccaataccatcatcatcaaccgggcagacatg
ttcggcctcgccgacctctaccagcttcgtggcagggtaggcagaagcgacaggaaagca
tacagctacctgatcacccctcccatgcaaaccctcaaggaagacgccatccagcgcctt
gccgtcatagaaagttttaccgaactgggctcaggcttcaccattgccatgcgtgacctc
gacatcaggggagcaggcaaccttcttggcgccgaacagtccggagcaattcatgagctc
ggcttcagcctttaccagaaacttctcgaagaagccgtagcggaacttaaaagcggcgta
ttcagctcgctttttgcccaggaaggccaggctgcctccatgcatgagcgcaattgcgac
ctctcgttctttttcgacgccctcattcccgattactatatctcatcagcacaggagcgc
ttcgctttttacgaacgcatttccaaggcggcgacaagtaaagcactcaacgacattgaa
gccgaactcaaggaccgcttcggccagctgccagaagaagtcaggaacctcctgcacctc
tccgggttcaagcaaaactgccagagcctgggcctgcagaaaatcgacctccagccggaa
acctgcgccttcacactgccaggacaggatgacgaagagttctatcgttccaggtttttc
cagaacctgatcggatccgtgcagcaggagtggatgcaagtatatgcaccccgcttcagg
gaagggcgccacatgaaacttacccttcaccatcctgccggtaccgacacatctcccaca
gagctcatggcaacatacagttccctgatcagggagttggagagaaaagaggattaa
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