Providencia huaxiensis: CYG50_17965
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Entry
CYG50_17965 CDS
T05654
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prq
Providencia huaxiensis
Pathway
prq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYG50_17965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prq03019
]
CYG50_17965
03016 Transfer RNA biogenesis [BR:
prq03016
]
CYG50_17965
Enzymes [BR:
prq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CYG50_17965
Messenger RNA biogenesis [BR:
prq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYG50_17965
Transfer RNA biogenesis [BR:
prq03016
]
Prokaryotic type
tRNA degradation factors
CYG50_17965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
S1
RNase_II_C_S1
OB_Dis3
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AXH63743
LinkDB
All DBs
Position
complement(3447939..3450401)
Genome browser
AA seq
820 aa
AA seq
DB search
MSQDPFQEREAEKYESPIPSREYILDLISKRTAPANREEIAQLLNLSTEDELEALRRRLR
AMERDGQLVFTRRKCYALPERLDLLKGKVIGHRDGYGFLRVDGKKEDYYLSQDEMKRALH
GDVILAQPYGQDRKGRTEVRVVRVLEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
DRVLGARMGNVVVVELVTRPQRRSQAVGNIIEVLGETMGTGMAVEIALRTHEIPHSWPPQ
VEKQVADLSEHVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVYCAPKKGGGWRLWVAIA
DVSYYVRQQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPGVDRLCMVCEMTVS
ASGKLSSYKFYEAVMSSHARLTYTKVWKILEGDEELREHYKALVPHIEHLHQLYKALDAA
RIERGAISFESEEAKFIFNAERRIESIEPVERNDAHKLIEECMILANIAAARFVEKNEEP
ALYRVHDRPKEESVMNLRSVFSELGLTLPGGMKPEPKDYAQVMNEVAERPDHELLQTMIL
RSMKQAIYDPENRGHFGLGLKSYAHFTSPIRRYPDLTLHRGIKYLLAKEHGHSDKRWTET
GGWHSDMDSMLQLGEHCSMTERRADEATRDVADWLKCDFMQDQVGQTFTGLITSVTGFGF
FVRLNDLFIDGLVHISTLDNDYYRYDAVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERT
IDFALISTTRKAKNPGKTARDKMKQEVKNAARPARRKADASKDKNFEPDSAFRRSEKKGK
KAEAKPEAKGKGKKPSDKTRKITAKLKAKRVAKKSQKQEG
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccttttcaggaaagagaagcagaaaaatacgagtccccaattccaagt
cgagaatatattcttgaccttatctcgaagcgtactgcaccagccaatcgcgaagaaatc
gcacaattattgaatttatcgacagaagatgaattagaggcgttgcgtcgtcggttaaga
gccatggaacgtgatggtcaattggttttcactcgtcgtaagtgctatgcattaccggag
cgtttagacttattaaaaggaaaagtcattggtcaccgtgatggttacggcttcctgcgc
gttgatggtaaaaaagaagattactatttatctcaagacgaaatgaaacgcgccctgcat
ggcgacgttattcttgcgcaaccttacggacaagatcgtaagggacgcacagaggttcgg
gttgttcgtgtgttagaaccacgtaataaccaaattgttggccgttattttatcgaatcg
ggtatgggctttgtcgtaccggatgatagccgtttaagttttgatattttgataccgaaa
gatcgtgttcttggcgctcgcatgggtaatgtggtggtggttgaattagtcactcgtcca
caacgtcgctcgcaagcggtggggaatatcattgaagtattaggcgaaaccatgggaaca
ggtatggcggtagaaatcgctttacgtactcatgaaattccacactcatggccaccacaa
gttgaaaaacaagtcgctgacctgagcgaacacgtccctgagtctgcgaaaaaagggcgc
gtggatttacgcgacttaccgttagtcaccattgacggtgaagatgctcgcgactttgat
gatgcagtatactgtgcaccgaaaaaaggcgggggttggcgcttatgggtggcaattgcg
gatgtaagctattatgttcgccagcaaacggctctggatacagaagcccgtagccgtggt
aactcggtatatttcccatctcaagtcgttcctatgctaccggaagtcctatcgaacggc
ctgtgctcacttaacccaggtgttgaccgcctgtgtatggtgtgtgaaatgacggtgtca
gcatccggtaagctttcttcgtacaagttctatgaagcggttatgagctctcatgcaagg
ttaacctatacaaaagtatggaaaatcttggaaggggatgaagaactgcgtgagcactat
aaagcgttagtgccgcatattgagcacttgcatcaactatataaagcacttgatgcagca
cgtattgagcgcggtgcaatttccttcgaatctgaagaagcgaaattcatttttaacgca
gaacgccgtattgaaagtatcgaacctgtagagcgaaatgatgcacataaattgattgaa
gaatgcatgattttagctaacattgcagccgctcggtttgttgagaaaaatgaagagcct
gcgttgtaccgtgtgcatgaccgccctaaagaagaaagcgtgatgaatttacgctctgtt
ttcagcgaattagggttgactctgccgggcggaatgaagccagaaccaaaagattatgcg
caagtcatgaatgaagtggctgaacgccctgatcatgaattactgcaaaccatgatttta
cgttcaatgaaacaagcgatttatgatcctgaaaaccgcggtcactttggtttaggtttg
aaatcatatgcccactttacatcgccaattcgtcgttaccctgacctgacgttacaccgt
ggaataaaatatttgttggctaaagagcatggccattcagataagcgctggacagaaacc
ggtggttggcattcagacatggacagcatgttacagctgggtgagcactgttcaatgact
gaacgccgtgctgatgaagcgacgcgtgatgtggcggactggctgaaatgtgattttatg
caagaccaagttggccaaaccttcacaggtttaattaccagtgtgactggttttggcttc
tttgtgcgccttaatgatttatttattgatggtttagtgcatatttcaacgttagataat
gactattaccgttacgatgcagttggtcagcgtttaattggtgaatcatcaggtacgact
tatcgccttggtgatgaagttgaaattcgcgttgaagcggtgcatatggatgagcgcacc
attgatttcgcattaatttcaaccacccgtaaagcgaaaaatccaggcaaaaccgctcgg
gacaaaatgaagcaagaagtgaaaaatgcggcacgtccagctcgtcgaaaagcggatgcg
agcaaagataaaaactttgagcctgattctgcatttcgtcgttccgagaaaaaaggaaaa
aaagccgaggctaaaccagaggcgaaaggaaaaggcaaaaagccttctgataaaacgcga
aaaattacagcaaaattaaaagctaaacgtgttgcaaaaaaatcccaaaaacaagaggga
taa
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