KEGG   Pseudoalteromonas rubra: AT705_06675Help
Entry
AT705_06675       CDS       T04179                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
prr  Pseudoalteromonas rubra
Pathway
prr03030  DNA replication
prr03410  Base excision repair
prr03420  Nucleotide excision repair
prr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:prr00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AT705_06675
   03410 Base excision repair
    AT705_06675
   03420 Nucleotide excision repair
    AT705_06675
   03430 Mismatch repair
    AT705_06675
Enzymes [BR:prr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AT705_06675
    6.5.1.6  DNA ligase (ATP or NAD+)
     AT705_06675
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AT705_06675
DNA replication proteins [BR:prr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AT705_06675
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AT705_06675
DNA repair and recombination proteins [BR:prr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AT705_06675
   NER (nucleotide excision repair)
    Other NER factors
     AT705_06675
   MMR (mismatch exicision repair)
    Other MMR factors
     AT705_06675
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ALU42666
UniProt: A0A0U3GCY3
LinkDB All DBs
Position
1:complement(1503680..1504519)
Genome map
AA seq 279 aa AA seqDB search
MNIQLTGWLLACLCYLQMACASSAPGVQLAKVYQAQQPVSHYLVSEKFDGVRAVWNGKQL
LTRTGQVIHAPAWFTSELPDMLLDGELWAGYHNFEFVSAVVRRHQASEQDWRQIHYLIFD
APSVAMPFAQRYDLYSQLINQLAQLHVRAIPQYRFTTKAELDEFFEQVLARGGEGVMLHE
HQAQHLAGRSSAILKYKPYFDAEAEVLEHLPGKGKYQGMMGAIRVKTPQGIVFKIGSGFT
EEQRREPPPIGSQVTYRYQGVTKFGKPRFARFLRVRQPL
NT seq 840 nt NT seq  +upstreamnt  +downstreamnt
atgaacattcaactgacaggttggctgttggcctgcctgtgttatctgcaaatggcctgt
gcaagttcagcccccggtgtgcaattggccaaagtgtatcaggcacagcagccggtctct
cattatctggtaagcgaaaaatttgatggcgtcagagcagtgtggaatggtaagcagctg
cttacccgaacgggtcaggtgatccatgcacccgcctggtttacctctgaattgccagat
atgctactggacggagagctgtgggctggctatcacaactttgagtttgtcagtgctgtg
gtgcggcgtcatcaggcatccgagcaggactggcggcaaatacattatctgatttttgat
gcgcccagcgtggccatgccctttgcacagcggtatgacctctattctcagcttatcaat
cagctggcacagcttcatgttcgcgcgatacctcagtatcggtttacaaccaaggctgag
ctggatgagttttttgagcaagtactggcacgcggtggtgaaggggttatgctgcatgaa
catcaggcacagcatctggctggtcgcagttcggccattctaaagtacaaaccttatttc
gacgccgaagctgaggtcttagaacatttgcccggcaaaggtaaatatcagggcatgatg
ggtgcaatccgggttaaaacgccacagggcattgtctttaaaattggttcggggttcacg
gaagagcagcgtcgtgagcctcccccaattggcagtcaggtgacctaccgatatcagggc
gtcacaaaatttggtaaaccgcgatttgcccgctttttacgtgtcaggcaacctctttaa

DBGET integrated database retrieval system