Pseudoalteromonas rubra: AT705_23265
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Entry
AT705_23265 CDS
T04179
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT705_23265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prr03019
]
AT705_23265
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_23265
Enzymes [BR:
prr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AT705_23265
Messenger RNA biogenesis [BR:
prr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT705_23265
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AT705_23265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
SNF2-rel_dom
AAA_22
DUF685
Motif
Other DBs
NCBI-ProteinID:
ALU45850
UniProt:
A0A0U3GLS9
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All DBs
Position
2:969005..970948
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AA seq
647 aa
AA seq
DB search
MNESTLHQTLSQRFGFSAFRPGQEQTVTQLVNGHSSLAIFPTGSGKSLCYQLTALQLPNL
TLVISPLLALMKDQLEFLHSKNINAASLDSTLTREQSQSVMQNVRNGSIKVLMISVERFK
NERFREFIKQVPVSMLVVDEAHCISEWGHNFRPDYLKLPDYRNELNIPLVLLLTATATKK
VKRDMANRFDIKPEHIVQTGFYRANLDLSVYAYPEAQKVQALIGYLKQQAGAGIVYVTLQ
QQAEQVAKQLQAAGVNAAAYHAGLDDSLRQSIQNDFMNNHKQVIVATIAFGMGIDKSDIR
FVVHYDLPKSIENYSQEIGRAGRDGQFSECITLANLDGVATLENFVYADTPEQASIQALI
DEIQSQQQQGLWEMQELSASKVSNIRLLALKTLLVQLELKGVIEAKYAFYADFRFKWLRT
EQEVINVFDANRQQFIQQIIANTQFKKVWGTVDIQALVQLGHDRNRIVAALDYLHEQGHI
ELESKRMMQVYQVNETKLAEPDLAKELADYFLDKEQAEVKRIGAMLRFFELNTCLSYNLA
RYFDDENAPQQCGHCSACRGQVAQLAQSKQTEFPSDDTLRNDLNALKQHLMQIGVTPSSA
ILTRFLTGMTSPLATSSKFRQRAGFGSCADIRYQQVLNKVKQLGFGA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatcgacgctccaccaaaccttatcgcagcgttttggcttttcagcattcagg
cctggtcaggaacagaccgttacccagctggttaacggccactctagcctcgcaattttc
ccaaccggttcaggtaaatccttgtgctatcagctgacagccttacagctccccaattta
actttagtaatctcacctttgctggcgcttatgaaagatcaactagagtttttacacagc
aaaaacatcaatgcggccagtttagattcaacgttaacccgcgagcaaagtcagtctgtg
atgcaaaatgttagaaatggcagcattaaagtgctgatgatctcggttgagcgttttaaa
aacgagcgcttcagagagttcattaagcaagtgcctgtctctatgctggtggttgatgaa
gcgcactgtatctctgagtggggtcacaatttcaggcccgattatcttaagttacccgac
tatcgtaatgagttaaacattccattagtgctgctgcttaccgccacggcgaccaaaaaa
gtaaagcgcgacatggcgaaccggtttgatataaaacccgagcatatcgttcagacgggc
ttttaccgtgccaacctggatttaagcgtgtatgcctacccggaagcgcagaaagtgcag
gcattgattggctatttaaagcaacaagctggcgcaggcattgtgtatgtcacgttgcaa
caacaggctgagcaggtggctaagcaattgcaggcggcgggtgtaaatgccgcagcctat
cacgccgggctggatgacagccttcgtcagagtatccaaaacgattttatgaacaatcac
aaacaagtgattgttgccacgattgccttcggcatgggcatagacaaatccgatattcgt
tttgtggtgcactacgacctgccaaaatcgatagaaaattacagtcaggagataggccgt
gcagggcgcgacgggcaattttcggaatgtattaccctggctaacttagatggcgttgcg
acgctcgagaactttgtttacgccgacacccctgagcaagccagcattcaggcgctgatt
gatgaaattcaatcgcagcaacagcagggcttatgggaaatgcaggaactcagcgcctcc
aaagtcagcaatattcgattgctggctttaaaaaccttgctggtgcagctcgaactcaaa
ggcgtaattgaggccaagtacgcgttttacgccgactttagattcaagtggttacgcaca
gagcaggaagtcataaatgtgttcgatgcgaaccgtcagcaatttattcagcagataatt
gccaatacacaatttaagaaagtgtggggcaccgttgatattcaggccttagtgcaactt
gggcacgacagaaatcggattgtagcagcactggattacctgcatgagcaagggcatatc
gagcttgagtcaaagcgcatgatgcaggtgtatcaggttaatgaaactaagctggcagag
ccagatttggccaaagaacttgcggattactttttagataaggagcaagccgaggttaaa
cgtattggggccatgctgcgcttttttgagttaaacacatgtttaagttataacttagcg
cgttattttgatgatgaaaatgcgccacaacaatgcgggcactgctcagcgtgccgaggc
caggttgcacaattagcccagtctaagcagacagaatttccgtcggacgacacattaaga
aacgacctaaatgcgttaaaacagcatttgatgcaaattggcgttacgccaagctccgca
atactgacccgattcctaaccggcatgacctcgccattggcaacgtcttccaaattcaga
cagcgcgccgggtttggcagctgcgcagacattcgctatcagcaggttttgaataaagta
aagcaattgggttttggggcataa
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