Planococcus rifietoensis: AUC31_12705
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Entry
AUC31_12705 CDS
T04201
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
prt
Planococcus rifietoensis
Pathway
prt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC31_12705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prt03019
]
AUC31_12705
03009 Ribosome biogenesis [BR:
prt03009
]
AUC31_12705
Messenger RNA biogenesis [BR:
prt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUC31_12705
Ribosome biogenesis [BR:
prt03009
]
Prokaryotic type
rRNA helicases
AUC31_12705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
SmaI
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ALS77082
UniProt:
A0A0U2YR07
LinkDB
All DBs
Position
complement(2704655..2706100)
Genome browser
AA seq
481 aa
AA seq
DB search
MNTNQFKDYGISEPIVKALEGLGYQQPTEVQQQVIPAALEKHDLTVKSQTGSGKTAAFGI
PLCELVDWDENKPQALVLTPTRELADQVKEDITHIGRFKRIKAAAIYGKHPFAYQKEELK
QKCHIVVGTPGRVLDHIEKGTLKLEKIEYLVLDEADEMLNMGFIEQVESIIKQLPKERTT
MLFSATFPGHLEKLQRDFMRSPRYIGIQAADTLEERIEHSLVIVKEQDKFQLLRDVTVVE
NPDSCIIFCRTKDQVDAVSEGLERLFYTSDQLHGGMTQEDRFGVMDDFRRGEFRYLVATD
VAARGIDIDGITHVINYDFPLEKESYVHRAGRTGRAGKSGKAISFVTPFEDKFLKETEDY
LGFDITRVERPSREQVALAKPAFEDKIESRQKPKKHKAAALNQDIMKLYFNGGKKKKLRA
VDFVGTLTSIPGITAEDIGIIKIQDTVTYIDILNGKGLHVLKAMKDKTVKGKTLKVHKAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgaatcaatttaaagattacggcatcagtgagccgattgtaaaagcgctggaa
ggccttggctaccaacaaccgaccgaagtacagcagcaagtcatcccggccgctcttgaa
aaacacgatttgaccgtcaaatcgcaaaccggcagcgggaagacagctgcattcggcatt
ccgctgtgcgaactcgtcgattgggatgaaaacaagccccaggcgctggtcttaacaccg
acacgagaacttgccgaccaggtgaaagaagacatcactcatatcggccgtttcaagcgc
atcaaagcagcggcgatctacggcaagcatccttttgcctatcagaaggaagaattgaag
caaaaatgccatatcgtcgtcggaacgccggggcgtgtgctcgaccatatcgaaaaaggc
acgttgaagctcgaaaaaatcgagtatttggtgctcgatgaagcagatgaaatgcttaat
atgggctttatcgaacaagtcgaatcgatcatcaaacagcttccgaaagaacggacgacg
atgctgttttcggcaaccttcccgggacatctggaaaaactgcagcgtgatttcatgcgc
tctccgcgctatattggaatccaggccgccgatactttggaagagcgcatcgagcattca
ctcgtcatcgtgaaagagcaggataaattccagttgctgcgcgatgtcacggtagtcgaa
aatccggatagctgcatcattttctgccggacgaaagaccaggtcgatgcggtgtcggaa
gggcttgaacgcctgttctacacaagcgatcaattgcacggggggatgacccaggaagat
cgtttcggcgtcatggatgatttccgccgcggcgaattccgctatttggtcgcaaccgat
gtcgcggcacgaggaatcgatatcgacggcatcacccatgtcatcaattatgattttccg
ctcgagaaggaaagctatgtccaccgtgccggccgcacggggcgggctggcaagagcggc
aaagcgatttcattcgtcacaccatttgaggataaattcctaaaagagacggaagattac
ttaggatttgacatcacgcgtgtcgagcggccgtcaagagagcaagtcgccttggcaaaa
ccagcattcgaagacaagatcgagagccgccagaagccgaaaaaacataaagctgcggca
ctcaaccaagacatcatgaagctgtatttcaacggaggcaaaaagaaaaagctgcgcgca
gtcgattttgtcggcacgctgacgagcataccgggaattacggcggaagatatcggcatc
atcaaaatccaggatactgtcacgtatatcgatatcctgaatggcaaagggctgcatgtc
ttgaaggcgatgaaagacaaaaccgtcaaaggcaaaaccttgaaagtccataaagctaaa
aaataa
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