Pontimonas salivibrio: C3B54_11926
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Entry
C3B54_11926 CDS
T05334
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
psai
Pontimonas salivibrio
Brite
KEGG Orthology (KO) [BR:
psai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C3B54_11926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psai03021
]
C3B54_11926
Transcription machinery [BR:
psai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C3B54_11926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
AVG23897
UniProt:
A0A2L2BQJ1
LinkDB
All DBs
Position
902880..904685
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AA seq
601 aa
AA seq
DB search
MASSRDSQGTNKAPRGLRGALRRLVGRGGDDAQNTVPAPDTQKDHISSVNTRSQDTAAKS
KKSGAVAPASQKAPAKKAPAKKPASKSTAAKAATTKATPAKSAAEKKPAATKEPAKSTAT
KKAAVKKAPVKKAPVKKAPAKKEPSSTPSAKAAASQTAAKKPAAKEPAAKKLAAKKPAAS
ATAAKKPAAKKASTANAPAKATAKKKPASAAAEESASDEESKEKVAPTASAAAGDNGSND
TDSDSDDEVIDDRQVEALGASILQGVAGAGEALPSGAIVIKSSDEEDVPIVSTTITGATA
DPVKDYLKQIGKVALLNAEQEVQLAWRIEAGLFAEEKLSELTQREKTTKLARELHEIAKD
GQRAKNHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA
TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELARELDMTP
EKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQRQLESLLDSL
SEREAGVIRMRFGLGDGMPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQALRDYL
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtggcttcgtcacgcgactcgcaaggtactaataaagctccaagaggtcttcggggtgct
ctccgtcggctcgttggtcgaggtggcgacgacgcccagaacacagtccccgcccccgat
acgcaaaaggatcacatttcttccgtgaacacccgctctcaggacacagcagccaaatcg
aaaaaatctggcgcggtagcacccgcatcccagaaggctccggcaaagaaggctcccgcg
aagaaaccggcatccaagtccactgccgctaaagctgccacgacaaaggcgacgccggcc
aagtccgctgcagagaaaaaacctgccgccacaaaagagccagcgaagtcaacggcaaca
aagaaggctgcggtgaagaaagctcctgtaaagaaagctcctgtaaagaaagctcccgcg
aagaaagagccaagttcgacaccttcggcaaaggctgcggcctcgcaaacagcggcgaag
aaacctgcggcgaaggagcctgccgcgaagaagctcgcagcgaagaagcccgctgcgtcg
gcgacggcagcgaagaaaccagccgcaaaaaaagcttcgactgctaacgcgccagccaag
gcgaccgcaaagaaaaagcctgcttccgctgccgcagaagaatccgcctccgatgaggaa
agcaaggaaaaagttgcaccgacggcttccgccgcagcgggggacaacggatcaaacgac
accgattcggacagtgacgatgaggtcatcgatgaccgtcaggtcgaagccctgggtgcc
tcaatccttcaaggggttgccggcgctggggaggcgcttccctccggtgcaatcgtcatc
aagagcagtgatgaagaagatgtccccattgtctccaccacaatcacgggcgcgacagct
gaccctgtcaaggattacctgaagcaaatcggaaaagttgccctgctgaatgctgagcag
gaagtgcaattggcctggaggattgaggccggacttttcgccgaagaaaaactctccgaa
ctgactcaacgcgaaaagaccacgaaactcgccagagaacttcacgagattgccaaagat
gggcagagggcaaaaaaccacctgttgggcgctaacttgcgcctcgtggtgtcgctcgca
aagcgctacaccggacgcggaatgcagttcctggatctcatccaagagggaaacctcggt
ctgattcgtgccgtagagaagtttgactacaccaagggctttaagttctcgacctatgcc
acatggtggattcgacaggccatcactcgcgcaatggctgatcaggcccgcaccattcgt
atccccgttcacatggtcgaagtcatcaataagcttgcccgggttcagcgccaaatgctt
caggacttgggccgcgaacccacccctgaagagcttgcccgtgagttggatatgactccg
gaaaaagttgttgaggttcaaaagtatggccgtgagcccatttcgcttcacaccccgcta
ggcgaggacggtgacagcgagtttggtgacctcatcgaagacaccgaggctgttgtcccc
gcggatgctgtcgggttcaccatgttgcagcggcagctggagtcgctgttagattcgctc
tcagagcgcgaagcgggcgttattcggatgcgttttggcttgggcgatgggatgccgaag
accttggaccaaattggtgacacctttggtgtgacccgagagcgaattcgccaaatcgaa
tccaagacgatggcaaagctgcgccacccttcgcgctctcaggccctgcgcgactacctc
gagtaa
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