KEGG   Pseudomonas syringae pv. syringae B728a: Psyr_3245Help
Entry
Psyr_3245         CDS       T00246                                 

Gene name
ligD
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psb  Pseudomonas syringae pv. syringae B728a
Pathway
psb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Psyr_3245 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psb03400]
    Psyr_3245 (ligD)
Enzymes [BR:psb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Psyr_3245 (ligD)
DNA repair and recombination proteins [BR:psb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Psyr_3245 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S ParE_toxin
Motif
Other DBs
NCBI-GeneID: 3368772
NCBI-ProteinID: YP_236315
UniProt: Q4ZRE5
LinkDB All DBs
Position
complement(3886134..3888734)
Genome map
AA seq 866 aa AA seqDB search
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQ
PQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLR
DSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDA
LKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNADWIKLKC
RLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVR
EDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQ
SIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEID
SVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVG
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLK
DDPWAGYSNRRKITQRMWKQLGAKRP
NT seq 2601 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccgccagtgaatacacccgcaagcgcaatttcgccatcacctccgagcct
gcggagagcaagcgtaagggcaaaggcaagtcgcagcctggcgcgctcggtttcgtgatc
cagaagcatgacgcacggaacctgcactacgactttcgactggagctcgatggcacgctc
aagagctgggccgtgcccaaaggtccgagcctggaccccacgcaaaagcgtctggcagtg
catgtcgaagaccatccgctggactacgccggcttcgagggcagtatcccgcaggggcag
tacggtggcggcgatgtgattgtctgggaccggggtgtctggcagccgcacggtgatccg
caaaagacctacgaggaaggcaaactcaagttcaccctggtcggcgagaaactcagcggt
gactgggcgctggtgcgtacccggctcaagggcagcggcagcaaggaacagtggctgctg
atcaaggaaaaggatgacgtcgcgcgacctgctgccgagtacgacatcacccatgagcag
ccgcaaagcgtgatcagtggagctcatgtcggcaagcaacgcggcacctcgaaaaagtcc
ggggccagcgccgccaaagccaaggccgcgacacccgccgcagcaaaagcgtcaatgccc
gctgcaaagccggcgcgcaggaaggcgaaatcggctttcctggacacgcttgcgccgcaa
ctggcgacgctggtggaggcgccgccagccggtgactggctgtatgaaatcaaattcgat
ggctaccgcatgctgactcgtattcagggcgacgatgtgcggctgtttacccgcaacggg
catgactggaccgagcggctgccggaactggtcaaggcgctcaagggcatgaagctgcgc
gacagctggttcgacggcgaagtggtggttctcgatgagcaggggctgcccgacttccag
ggcctgcagaatgcctttgacgcgggcaacagcaaggacattctgtattacctgttcgac
atgccgtttctgagcgcggaggacctgcgtgaagtgccgctcgagcagcgtcgggatgcc
ttgaaacaagttctcgacgcacagaaaagtcgcctgttgcgttactcggatgcctttcag
gcaggccatcaggacattgtcgcgagtgctgcggcaatgggcctggaaggggtgatcggc
aagcgtgccggcagtgcctacgtcagcaagcgcaatgccgactggatcaagctcaaatgt
cgcttgcgacaggaattcgtggtcgtcggctatacggcgccgcagggcagccgatcggcg
ttcggggccttgttgcttgcggtcaatgccggtgaggacgggttgatctatgccgggcgg
gtcggcaccgggttcactgaagtgagccttgagcaactgcataaacagctgaagaagttg
cagcgcaaggattcaccgctggccaaaaagctctccgcgtcccaggcgcgtggcgtgcag
tgggtggcgccgcaactggtctgcgaagccgagttcgcccagtggacccgcgaaggcatc
gtgcgccaggctgcctttgtcgggctgcgtagcgacaagcccgccaaggacgtggtgcgt
gaagacgctcagcctgccaaagtggccagccagcccccaaccacaacggcagcgcccaag
gcacgcaaaaaggccgcgcagggaaaggttgatgtagcgggcaccggcatcagtcatccg
gaccgcgtcatcgacagcaagtccggcaccagcaagatcgaactggcgcagttttaccag
tccatcgccgactggattctgccctacctgaacaagcgtcccgtggctctgctgcgctgt
ccggagggcatcgacggtgagcagtttttccagaagcatgccgaacatctggcgatcccg
cacatcaggcaactggatcgtgccctggaccccgggcatgccgcgctgatggaaatagat
tcggtgccggcactggtcggtgctgcgcaaatgggcgccatcgagctgcatacctggggc
gcgacgcgtgacagaatcgaaacgccggaccatttcgtgctggaccttgatcccgatccg
gcactgccctggcgcagcatgatcgaggccacgcaaatggtgctcgccgtgctggaagaa
ctggggctggaggctttcctcaagaccagcggtggcaagggcatgcacatcattgtgccg
ttggcgcgccaggcagactgggacacggtaaaggcgttcgccaaggccatcgccgagttt
gccagccgtcagctgccggaacgcttcaccgccaccatggggccgaaaaaccgcgtcgga
aaaatcttcatcgattacctgcgcaacagccgcggcggcagcaccgtaaccgcctactca
gtacgcgcccggcccgggttgccggtctcggtgccgatcgcgctggatgagctggcgggt
ctgaagtcgtcggcacagtgggacatcaccaaccttgagcagcgtttgaagcggctcaag
gacgacccgtgggccggttacagcaaccggcgcaaaatcacgcagaggatgtggaagcaa
ctgggtgcgaaacggccttga

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